Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0197.Seq
         (872 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1827 + 40169001-40169263,40169358-40169472,40170090-401702...    30   2.1  
04_04_0561 - 26250488-26251451,26251499-26251620                       29   3.7  

>01_06_1827 +
           40169001-40169263,40169358-40169472,40170090-40170201,
           40170556-40170623,40170798-40170852,40170948-40171027,
           40171811-40171924,40172178-40172296,40173064-40173181,
           40173264-40173394,40173535-40173688,40173922-40174017
          Length = 474

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 15/40 (37%), Positives = 15/40 (37%)
 Frame = -1

Query: 194 CLSSSRTSPPPCLCSVSG*ISLRFCSDFPFSRGXLRRWLC 75
           C        PP L  V          DF FSRG LR W C
Sbjct: 92  CTHEVDLDKPPVLQEVENFFKGHGVGDFTFSRGRLREWRC 131


>04_04_0561 - 26250488-26251451,26251499-26251620
          Length = 361

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = -1

Query: 329 ITSLLETTMLIASVFQTSMLQTLFQPPCSKLPCSRP 222
           +T    +   IA +F       +  PPCS LPC RP
Sbjct: 210 LTESASSPCAIAGLFTLPPPAIIASPPCSTLPCLRP 245


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,896,310
Number of Sequences: 37544
Number of extensions: 357015
Number of successful extensions: 884
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 868
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 883
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2456227356
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)