Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0197.Seq
         (872 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_47922| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.0  
SB_18579| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.6  
SB_23350| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.6  
SB_54836| Best HMM Match : Chlam_PMP (HMM E-Value=7.9e-08)             28   8.7  
SB_58276| Best HMM Match : MIB_HERC2 (HMM E-Value=8.3e-33)             28   8.7  

>SB_47922| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 298

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
 Frame = +1

Query: 133 LIHPETEHKHGGGLVLEDDRHNIEHHIASAGLE---HGSFEHG 252
           ++ PETEH      V   D  NIE  IA   L+   HG+F+ G
Sbjct: 147 ILDPETEHIENVETVNGKDLQNIEGDIAKKKLDESLHGTFDKG 189


>SB_18579| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 262

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 12/36 (33%), Positives = 15/36 (41%)
 Frame = -1

Query: 257 QPPCSKLPCSRPAEAIWCSMLCLSSSRTSPPPCLCS 150
           QP C   PC    +A  C+  C +     P  C CS
Sbjct: 68  QPACGGSPCPTLRKAQPCNRFCHNGGMPVPNQCYCS 103


>SB_23350| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 704

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = +2

Query: 188 TDTTLNTISLLLVLSTEALNTAAGTRSGAWR 280
           TDT  + +S+   L +EAL+ AAG R  A R
Sbjct: 326 TDTAWSRLSVTYYLESEALHVAAGARRSASR 356


>SB_54836| Best HMM Match : Chlam_PMP (HMM E-Value=7.9e-08)
          Length = 598

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = +1

Query: 154 HKHGGGLVLEDDRHNIEHHIASAGLEHGSFEHGGWNKVWSMEV 282
           H HG G +  D  + + H I    +EH + ++ G  K+W  +V
Sbjct: 443 HNHGAGGM--DIEYGLLHVIGELVIEHNTCQNAGALKLWGSQV 483


>SB_58276| Best HMM Match : MIB_HERC2 (HMM E-Value=8.3e-33)
          Length = 2822

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 14/33 (42%), Positives = 21/33 (63%)
 Frame = +2

Query: 155  TSTAVDLSSRTTDTTLNTISLLLVLSTEALNTA 253
            +ST    SS +T TTLNT++  L++  E  +TA
Sbjct: 1322 SSTPTSSSSTSTPTTLNTVTSSLLMMQERPSTA 1354


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,067,566
Number of Sequences: 59808
Number of extensions: 415765
Number of successful extensions: 1002
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 924
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 994
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2503194881
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)