Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0197.Seq
         (872 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY705396-1|AAU12505.1|  710|Anopheles gambiae nicotinic acetylch...    24   7.0  
AJ439060-7|CAD27758.1|  849|Anopheles gambiae putative V-ATPase ...    24   7.0  
AY280611-1|AAQ21364.1| 1102|Anopheles gambiae chloride/bicarbona...    23   9.2  

>AY705396-1|AAU12505.1|  710|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 3 protein.
          Length = 710

 Score = 23.8 bits (49), Expect = 7.0
 Identities = 18/62 (29%), Positives = 24/62 (38%), Gaps = 4/62 (6%)
 Frame = +1

Query: 37  EHFHPVPVYVKKEHSHLLKXPLEKGKSEQNLKLIHPETEHKH----GGGLVLEDDRHNIE 204
           +H  P+P  +  + S LL   L       N   +H    H H    GGG      RH+  
Sbjct: 382 DHIPPLPPTIAFDPSVLLDHHLLDSSESLNTCRLHGSPTHLHNHRSGGG-----GRHHHH 436

Query: 205 HH 210
           HH
Sbjct: 437 HH 438


>AJ439060-7|CAD27758.1|  849|Anopheles gambiae putative V-ATPase
           protein.
          Length = 849

 Score = 23.8 bits (49), Expect = 7.0
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +3

Query: 615 KCLFELFRIPVPDLDLIQK 671
           KCL     +PVPDL  +QK
Sbjct: 320 KCLIGECWVPVPDLPKVQK 338


>AY280611-1|AAQ21364.1| 1102|Anopheles gambiae chloride/bicarbonate
           anion exchanger protein.
          Length = 1102

 Score = 23.4 bits (48), Expect = 9.2
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = +3

Query: 24  LDQVRTLPPRSCVREEGAQPPSQXPS*KGKIRAKPQADSP 143
           LD V  LPP         +PP+  PS   ++R +P   +P
Sbjct: 435 LDAVTVLPPGEWDPSIRIEPPAAIPS--QEVRKRPPEKNP 472


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 741,549
Number of Sequences: 2352
Number of extensions: 13923
Number of successful extensions: 55
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 55
length of database: 563,979
effective HSP length: 64
effective length of database: 413,451
effective search space used: 93439926
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)