Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0197.Seq
         (872 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z84574-5|CAB06541.1|  846|Caenorhabditis elegans Hypothetical pr...    30   2.5  
Z35719-6|CAA84795.1| 1253|Caenorhabditis elegans Hypothetical pr...    29   3.3  
Z78543-5|CAH10796.1| 1453|Caenorhabditis elegans Hypothetical pr...    29   5.7  
Z78543-4|CAB01754.1| 1785|Caenorhabditis elegans Hypothetical pr...    29   5.7  
Z72502-2|CAA96588.1|  423|Caenorhabditis elegans Hypothetical pr...    28   7.6  

>Z84574-5|CAB06541.1|  846|Caenorhabditis elegans Hypothetical
           protein F33E2.6 protein.
          Length = 846

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -1

Query: 245 SKLPCSRPAEAIWCSMLCLSSSRTSPPP 162
           +K P + P++ +WC  L   S  +SPPP
Sbjct: 117 TKAPTTEPSDDLWCWQLRSRSFASSPPP 144


>Z35719-6|CAA84795.1| 1253|Caenorhabditis elegans Hypothetical
           protein F17C8.1 protein.
          Length = 1253

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 21/77 (27%), Positives = 32/77 (41%), Gaps = 3/77 (3%)
 Frame = +1

Query: 64  VKKEHSHLLKXPLEKGKSEQNLK--LIHPETEHKHGGGLVLEDDRHNIEHHIASA-GLEH 234
           +K   S  L+  L+ G S+ N    L    + H +   L   D  +N +  +A   G   
Sbjct: 636 IKGSRSSGLQLSLQDGNSDLNSVGGLDTAISHHHNAASLTRFDTDNNFDQRLAMVIGQGE 695

Query: 235 GSFEHGGWNKVWSMEVW 285
           G F+ G WN   S+  W
Sbjct: 696 GGFDKGFWNHHDSLNKW 712


>Z78543-5|CAH10796.1| 1453|Caenorhabditis elegans Hypothetical
           protein F29G6.3c protein.
          Length = 1453

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
 Frame = +1

Query: 70  KEHSHLLKXPLEKGKSEQNLKLIHPETEHKHGGGLVLEDDRH--NIEHHIASA 222
           +EH ++   PLEK     +LK++HPE  +        ED +   N EHH   A
Sbjct: 739 REHHYV---PLEKRSQSLDLKVVHPEHHYVPLVRKTTEDHQQKVNHEHHFIPA 788


>Z78543-4|CAB01754.1| 1785|Caenorhabditis elegans Hypothetical
           protein F29G6.3b protein.
          Length = 1785

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
 Frame = +1

Query: 70  KEHSHLLKXPLEKGKSEQNLKLIHPETEHKHGGGLVLEDDRH--NIEHHIASA 222
           +EH ++   PLEK     +LK++HPE  +        ED +   N EHH   A
Sbjct: 739 REHHYV---PLEKRSQSLDLKVVHPEHHYVPLVRKTTEDHQQKVNHEHHFIPA 788


>Z72502-2|CAA96588.1|  423|Caenorhabditis elegans Hypothetical
           protein C08B6.5 protein.
          Length = 423

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = -1

Query: 320 LLETTMLIASVFQTSMLQTLFQPPCSKLP 234
           L+   M IA  +QTSM   L  PP S++P
Sbjct: 179 LIVAMMSIAQYYQTSMNSRLTAPPSSRIP 207


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,415,394
Number of Sequences: 27780
Number of extensions: 317386
Number of successful extensions: 753
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 729
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 753
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2192413762
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)