Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0197.Seq
         (872 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex det...    23   4.9  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   4.9  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    22   6.4  

>AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex
           determiner protein.
          Length = 418

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = +1

Query: 58  VYVKKEHSHLLKXPLEKGKSE 120
           +Y+K  H+H  K  LE+ K++
Sbjct: 66  LYIKYSHTHEKKLVLERSKTK 86


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 12/29 (41%), Positives = 13/29 (44%)
 Frame = +1

Query: 412 TVITTLNTDRLYLATAXRATNTKAINLIK 498
           T+ TT  T     ATA     T A  LIK
Sbjct: 106 TITTTTTTTTTTTATAAATATTTATGLIK 134


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
          factor 2 protein.
          Length = 690

 Score = 22.2 bits (45), Expect = 6.4
 Identities = 6/16 (37%), Positives = 12/16 (75%)
 Frame = +1

Query: 28 IKFEHFHPVPVYVKKE 75
          I ++H+H  PV+ K++
Sbjct: 6  IHYQHYHITPVFTKQK 21


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 194,656
Number of Sequences: 438
Number of extensions: 3461
Number of successful extensions: 8
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28280841
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)