Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0196.Seq
         (822 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC11E3.07 |vma4||V-type ATPase subunit E|Schizosaccharomyces p...    54   2e-08
SPBP18G5.03 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    27   4.3  
SPBC23G7.14 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    26   5.6  
SPBC215.10 |||haloacid dehalogenase-like hydrolase|Schizosacchar...    26   7.4  
SPACUNK4.08 |||dipeptidyl aminopeptidase |Schizosaccharomyces po...    26   7.4  
SPAC3H1.01c |orp3|orc3, SPAP14E8.06c|origin recognition complex ...    25   9.8  
SPAC3G9.13c |msw1||mitochondrial tryptophan-tRNA ligase Msw1 |Sc...    25   9.8  

>SPAC11E3.07 |vma4||V-type ATPase subunit E|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 227

 Score = 54.4 bits (125), Expect = 2e-08
 Identities = 26/92 (28%), Positives = 53/92 (57%)
 Frame = +2

Query: 257 KKIQSSNMLNQARLKVLKVREDHVRNVLDEAXKRLAEVPKDTKLYSELLVTLIVQALFQL 436
           +KI  SN+LN++RL++L  ++  + ++     K+L  + +    Y++ +  LIVQA+  L
Sbjct: 68  QKIAKSNVLNKSRLEILNSKQKVIDDIFSRVEKKLDGIEQKKDAYTKFMADLIVQAMELL 127

Query: 437 MEPTVTIRVRQTDKALVESLLGKANKTTRIRS 532
            EP   +  RQ D  +V++ + KA +  + ++
Sbjct: 128 GEPVGIVYSRQRDAEIVKAAIPKATEVLKSKN 159



 Score = 26.6 bits (56), Expect = 4.3
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +1

Query: 538 DVVLKVDTENFLSPDTCGGIELVAARGRIQ 627
           D  L  +T++FL+    GG+ LV   G+I+
Sbjct: 163 DYELDAETDDFLNDSVLGGVVLVGLGGKIR 192


>SPBP18G5.03 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 430

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +1

Query: 247 LNLEEDPIFEHAEPSSSEGTESA 315
           LN++  PIF +  PSSS  +ES+
Sbjct: 344 LNIDSSPIFTNHSPSSSLSSESS 366


>SPBC23G7.14 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 131

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -3

Query: 691 LSPAAAAGRISSKRDSRSVADLEYVPWL 608
           L   A +  + SK  S+S+  LEYV WL
Sbjct: 99  LKEKATSMEMESKLCSKSITPLEYVSWL 126


>SPBC215.10 |||haloacid dehalogenase-like
           hydrolase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 302

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = +2

Query: 320 DHVRNVLDEAXKRLAEVPKDTKLYSELLVTLIVQALFQLMEP 445
           D   N L+EA KRLA +P D     E+ +T  +   F+++ P
Sbjct: 181 DDDTNGLEEAKKRLAGIPSD-----EVALTQALPQTFEIIPP 217


>SPACUNK4.08 |||dipeptidyl aminopeptidase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 793

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = +3

Query: 471 PTRLWWSPCSEKLTRLQ 521
           P+ +WWSP S+K+  L+
Sbjct: 228 PSTIWWSPDSDKIAFLK 244


>SPAC3H1.01c |orp3|orc3, SPAP14E8.06c|origin recognition complex
           subunit Orp3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 690

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
 Frame = -3

Query: 451 DSGFHELEESLHNKCDQQL*VQF-GVLWHFSQALXSFIKYITYVIFTHFQYLQTSLVQHV 275
           +S F  +EESL  K   +    F  + +  S ++   I+ I Y I THF     S+++H+
Sbjct: 241 ESLFTSIEESLSLKFGWRTRRFFRSMFYERSWSVERVIECIRYSILTHFYGNALSIIEHL 300


>SPAC3G9.13c |msw1||mitochondrial tryptophan-tRNA ligase Msw1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 361

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = -2

Query: 332 YVRDLHALSVPSDEL 288
           +V DLHAL+VP D L
Sbjct: 56  FVADLHALTVPQDPL 70


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,883,236
Number of Sequences: 5004
Number of extensions: 54458
Number of successful extensions: 162
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 402440190
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)