Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ps4M0196.Seq
(822 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0134 + 26805329-26805430,26807130-26807230,26807876-268080... 65 6e-11
05_05_0231 + 23488588-23488689,23488775-23488875,23489012-234891... 61 9e-10
01_01_0858 - 6699126-6699128,6699219-6699318,6700052-6700278,670... 59 4e-09
09_01_0050 + 853712-855368,855440-856113 32 0.48
09_02_0115 + 4413714-4414475 32 0.63
12_02_0312 + 17395716-17398112 30 1.9
10_08_0762 - 20410681-20411834,20411999-20412098,20412200-204122... 30 2.6
11_01_0311 + 2322511-2323527 29 4.5
03_03_0230 - 15623648-15623653,15624333-15624383,15624477-156245... 29 4.5
07_03_1544 - 27585581-27585757,27585986-27586091,27586246-275863... 28 7.8
03_06_0108 + 31708713-31709079,31709258-31709822,31709933-317100... 28 7.8
>01_06_0134 +
26805329-26805430,26807130-26807230,26807876-26808032,
26808386-26808582,26809188-26809287,26809501-26809536
Length = 230
Score = 65.3 bits (152), Expect = 6e-11
Identities = 35/84 (41%), Positives = 52/84 (61%)
Frame = +2
Query: 257 KKIQSSNMLNQARLKVLKVREDHVRNVLDEAXKRLAEVPKDTKLYSELLVTLIVQALFQL 436
KKI+ S LN +R+KVL+ ++D V ++ ++A K+L V + Y LL L+VQ L +L
Sbjct: 66 KKIEYSMQLNASRIKVLQAQDDLVNSMKEDATKQLLRVSHNHHEYKNLLKELVVQGLLRL 125
Query: 437 MEPTVTIRVRQTDKALVESLLGKA 508
EP V +R R+ D VES+L A
Sbjct: 126 KEPAVLLRCRKEDHHHVESVLHSA 149
Score = 58.8 bits (136), Expect = 5e-09
Identities = 29/67 (43%), Positives = 42/67 (62%)
Frame = +3
Query: 63 LSDADVQKQIKHMMAFIEQXXXXXXXXXXXXXXXXFNIEKGRLVQQQRLKIMEYYEKKEK 242
++DADV KQI+ M+ FI Q FNIEK +LV+ ++ KI + YE+KEK
Sbjct: 1 MNDADVAKQIQQMVRFIRQEAEEKASEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEK 60
Query: 243 QVELRRR 263
QVE+R++
Sbjct: 61 QVEVRKK 67
>05_05_0231 +
23488588-23488689,23488775-23488875,23489012-23489168,
23489365-23489594,23489696-23489795,23489878-23489916
Length = 242
Score = 61.3 bits (142), Expect = 9e-10
Identities = 42/113 (37%), Positives = 62/113 (54%), Gaps = 11/113 (9%)
Frame = +2
Query: 209 QDYGIL*KEGEAG*T*KKIQSSNMLNQARLKVLKVREDHVRNVLDEAXKRLAEVPKDTKL 388
QDY K+ + G +KI+ S LN AR+KVL+ ++ V + ++A K L V KD
Sbjct: 53 QDYERKAKQVDVG---RKIEYSTQLNAARIKVLRAQDGVVGEMKEDAGKSLLRVTKDATA 109
Query: 389 YSELLVTLIV-----------QALFQLMEPTVTIRVRQTDKALVESLLGKANK 514
Y ++L LIV Q+L +L EP+V +R R+ D+ VES+L A K
Sbjct: 110 YRKVLKGLIVQRKDSEIIDQIQSLLRLREPSVVLRCREADRGHVESVLEAAKK 162
Score = 51.2 bits (117), Expect = 1e-06
Identities = 27/72 (37%), Positives = 41/72 (56%)
Frame = +3
Query: 63 LSDADVQKQIKHMMAFIEQXXXXXXXXXXXXXXXXFNIEKGRLVQQQRLKIMEYYEKKEK 242
++DADV KQI+ M+ FI Q FNIEK +LV+ ++ +I + YE+K K
Sbjct: 1 MNDADVGKQIQQMVRFILQEAEEKASEISVAAEEEFNIEKLQLVESEKRRIRQDYERKAK 60
Query: 243 QVELRRRSNLRT 278
QV++ R+ T
Sbjct: 61 QVDVGRKIEYST 72
>01_01_0858 -
6699126-6699128,6699219-6699318,6700052-6700278,
6701032-6701188,6701422-6701522,6702147-6702251
Length = 230
Score = 59.3 bits (137), Expect = 4e-09
Identities = 36/94 (38%), Positives = 54/94 (57%), Gaps = 10/94 (10%)
Frame = +2
Query: 257 KKIQSSNMLNQARLKVLKVREDHVRNVLDEAXKRLAEVPKDTKLYSELLVTLIVQ----- 421
KKI+ S LN +RL+VL+ ++D ++L+ A K L + +D +Y LL IVQ
Sbjct: 67 KKIEYSKQLNASRLEVLQAQDDLAMSMLEAAGKELLYITRDHHVYKNLLRIFIVQDKLTK 126
Query: 422 -----ALFQLMEPTVTIRVRQTDKALVESLLGKA 508
+L +L EP V +R R+ D+ LVES+L A
Sbjct: 127 KNPEQSLLRLKEPAVILRCRKEDRELVESVLESA 160
Score = 41.5 bits (93), Expect = 8e-04
Identities = 20/67 (29%), Positives = 36/67 (53%)
Frame = +3
Query: 63 LSDADVQKQIKHMMAFIEQXXXXXXXXXXXXXXXXFNIEKGRLVQQQRLKIMEYYEKKEK 242
++D DV +Q+K M FI Q F IEK +LV+ ++ +I +E+ EK
Sbjct: 2 MNDGDVARQLKQMTDFIRQEAVEKAAEIEAAAAEEFQIEKLQLVEAEKKRIRLEFERNEK 61
Query: 243 QVELRRR 263
Q +++++
Sbjct: 62 QGDIKKK 68
>09_01_0050 + 853712-855368,855440-856113
Length = 776
Score = 32.3 bits (70), Expect = 0.48
Identities = 18/35 (51%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
Frame = -3
Query: 700 GVTLSPAAAAG--RISSKRDSRSVADLEYVPWLQP 602
G TL PAAAAG R SKR ++S+ DL P P
Sbjct: 618 GDTLKPAAAAGAGRFGSKRSAKSLPDLSPPPGASP 652
>09_02_0115 + 4413714-4414475
Length = 253
Score = 31.9 bits (69), Expect = 0.63
Identities = 15/33 (45%), Positives = 18/33 (54%)
Frame = +1
Query: 391 LRAAGHTYCAGSLPAHGTHCHHPRPSNRQGSGG 489
LR H+ + SLP H HHPRP +GS G
Sbjct: 20 LRLFSHSSASASLPLLLGHFHHPRPVPPRGSPG 52
>12_02_0312 + 17395716-17398112
Length = 798
Score = 30.3 bits (65), Expect = 1.9
Identities = 15/50 (30%), Positives = 29/50 (58%)
Frame = +2
Query: 257 KKIQSSNMLNQARLKVLKVREDHVRNVLDEAXKRLAEVPKDTKLYSELLV 406
++++ +N+ N L VLK+ D + + L L+ PKD +++ ELL+
Sbjct: 381 QEVKETNIPNTDILSVLKLSYDALPSDLRACFASLSTFPKDYEIFRELLI 430
>10_08_0762 -
20410681-20411834,20411999-20412098,20412200-20412298,
20412563-20414133,20415080-20415128
Length = 990
Score = 29.9 bits (64), Expect = 2.6
Identities = 17/45 (37%), Positives = 27/45 (60%)
Frame = +2
Query: 290 ARLKVLKVREDHVRNVLDEAXKRLAEVPKDTKLYSELLVTLIVQA 424
+RL++LK R+D++ N LD+A K+ E D + E V +QA
Sbjct: 826 SRLRILKCRDDNI-NSLDDAIKQHVEACTDQPNWDEDGVVAKIQA 869
>11_01_0311 + 2322511-2323527
Length = 338
Score = 29.1 bits (62), Expect = 4.5
Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Frame = +3
Query: 582 HLWWYRA--GCSQGTYSRSATLLESRLELIRPAAAAGDNVTPSFGRNP 719
H WW+R GC+ R+ + LESRL L AAA G ++ ++P
Sbjct: 291 HGWWFREPPGCAV-VMLRARSALESRLWLEEEAAAPGFSLIVQAFKSP 337
>03_03_0230 -
15623648-15623653,15624333-15624383,15624477-15624546,
15624646-15624848,15625011-15625116,15625228-15625295,
15625410-15625453,15628360-15628602,15629482-15629691,
15630207-15630287,15630289-15630355,15632167-15632386,
15632534-15632646,15634322-15634416,15634509-15634629
Length = 565
Score = 29.1 bits (62), Expect = 4.5
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = -3
Query: 763 VRCSPLNLIGEFYGLGLRPKEGVTLSPAAAAG 668
++CSPL +GE YG L GV+L+ + AG
Sbjct: 345 LKCSPLYHVGESYGGKLAAMIGVSLTKSIHAG 376
>07_03_1544 -
27585581-27585757,27585986-27586091,27586246-27586338,
27587840-27587958,27588486-27588746,27589226-27589515,
27589624-27590152
Length = 524
Score = 28.3 bits (60), Expect = 7.8
Identities = 15/35 (42%), Positives = 19/35 (54%)
Frame = -1
Query: 702 RALRYLRQQLLGESAPSETPEVLLILNTSPGCNQL 598
RAL Y + G +A S +LL LN PGC+ L
Sbjct: 113 RALFYYLAEADGGAAASSKAPLLLWLNGGPGCSSL 147
>03_06_0108 +
31708713-31709079,31709258-31709822,31709933-31710015,
31710231-31710319,31710486-31710559,31710654-31710704,
31710807-31710883,31711454-31712031,31712388-31712555,
31713364-31713417,31713456-31713467,31713554-31713715
Length = 759
Score = 28.3 bits (60), Expect = 7.8
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +1
Query: 409 TYCAGSLPAHGTHCHHPRPSNRQGSGG 489
TYCAG + G H HH ++Q GG
Sbjct: 34 TYCAGGVDDVGHHHHHHVHQHQQQHGG 60
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,138,873
Number of Sequences: 37544
Number of extensions: 420625
Number of successful extensions: 1253
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1211
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1248
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2256438528
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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