Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0196.Seq
         (822 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_52835| Best HMM Match : vATP-synt_E (HMM E-Value=2.1e-05)           52   7e-07
SB_50642| Best HMM Match : Spectrin (HMM E-Value=1)                    29   3.4  
SB_57508| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.0  
SB_8257| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   6.0  
SB_52825| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.0  
SB_14673| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.0  

>SB_52835| Best HMM Match : vATP-synt_E (HMM E-Value=2.1e-05)
          Length = 288

 Score = 51.6 bits (118), Expect = 7e-07
 Identities = 25/61 (40%), Positives = 38/61 (62%)
 Frame = +2

Query: 308 KVREDHVRNVLDEAXKRLAEVPKDTKLYSELLVTLIVQALFQLMEPTVTIRVRQTDKALV 487
           K  E   + +LDEA +RL +V +D   Y +++  LI Q L+QL+E  V IR R+ D +LV
Sbjct: 68  KAEEIDAKRILDEAVERLGKVTQDQGKYQQIIQGLITQGLYQLLESKVLIRCRKQDVSLV 127

Query: 488 E 490
           +
Sbjct: 128 K 128



 Score = 33.1 bits (72), Expect = 0.28
 Identities = 12/24 (50%), Positives = 18/24 (75%)
 Frame = +1

Query: 511 QDYKNKIKKDVVLKVDTENFLSPD 582
           ++YK + KK++ L VD +NFL PD
Sbjct: 180 EEYKKQTKKEIELTVDEQNFLGPD 203


>SB_50642| Best HMM Match : Spectrin (HMM E-Value=1)
          Length = 739

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +2

Query: 293 RLKVLKVREDHVRNVLDEAXKRLAEV 370
           R+  LK +ED ++N+LDE   +  EV
Sbjct: 147 RINTLKTKEDEIKNILDEQRGKAEEV 172


>SB_57508| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1215

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
 Frame = +1

Query: 514 DYKNKI-KKDVVLKVDTENFLSPDTCGGIEL 603
           DY N+I   D+V++ D  N L PD+ G IEL
Sbjct: 47  DYGNRIIGLDLVVRNDDGNILDPDSTGVIEL 77


>SB_8257| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 710

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 12/24 (50%), Positives = 18/24 (75%)
 Frame = +2

Query: 539 TLC*KSTLRTFCRPTPVVVSSWLQ 610
           +LC  S L  FC PTPV+VS++++
Sbjct: 658 SLCAMSGLILFCLPTPVLVSNFIK 681


>SB_52825| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1141

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 13/31 (41%), Positives = 20/31 (64%)
 Frame = -2

Query: 344  HQVHYVRDLHALSVPSDELGSACSKIGSSSK 252
            + + +V D HAL+V S E+     KIG+S+K
Sbjct: 1108 YDIMWVDDTHALAVFSSEITGDVMKIGASAK 1138


>SB_14673| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 98

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 13/31 (41%), Positives = 20/31 (64%)
 Frame = -2

Query: 344 HQVHYVRDLHALSVPSDELGSACSKIGSSSK 252
           + + +V D HAL+V S E+     KIG+S+K
Sbjct: 65  YDIMWVDDTHALAVFSSEITGDVMKIGASAK 95


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,215,963
Number of Sequences: 59808
Number of extensions: 428192
Number of successful extensions: 1288
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1288
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2299585728
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)