Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0196.Seq
         (822 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF045642-4|AAK67210.1|  226|Caenorhabditis elegans Vacuolar h at...    86   3e-17
Z81071-2|CAB03012.1|  618|Caenorhabditis elegans Hypothetical pr...    28   9.3  
U28730-5|AAA68259.1|  470|Caenorhabditis elegans Hypothetical pr...    28   9.3  

>AF045642-4|AAK67210.1|  226|Caenorhabditis elegans Vacuolar h
           atpase protein 8 protein.
          Length = 226

 Score = 86.2 bits (204), Expect = 3e-17
 Identities = 42/67 (62%), Positives = 49/67 (73%)
 Frame = +3

Query: 63  LSDADVQKQIKHMMAFIEQXXXXXXXXXXXXXXXXFNIEKGRLVQQQRLKIMEYYEKKEK 242
           +SD DVQKQ++HMMAFIEQ                FNIEKGRLVQQQR KIME++EKKEK
Sbjct: 3   ISDNDVQKQLRHMMAFIEQEANEKAEEIDAKAEEEFNIEKGRLVQQQRQKIMEFFEKKEK 62

Query: 243 QVELRRR 263
           QVEL+R+
Sbjct: 63  QVELQRK 69



 Score = 78.6 bits (185), Expect = 5e-15
 Identities = 39/81 (48%), Positives = 51/81 (62%)
 Frame = +2

Query: 257 KKIQSSNMLNQARLKVLKVREDHVRNVLDEAXKRLAEVPKDTKLYSELLVTLIVQALFQL 436
           +KIQ+SN LN  RL+ LK REDH+  VLDEA   L+ +  D   Y  +L  L++Q L QL
Sbjct: 68  RKIQASNSLNAGRLRCLKAREDHIGAVLDEARSNLSRISGDAARYPAILKGLVMQGLLQL 127

Query: 437 MEPTVTIRVRQTDKALVESLL 499
           +E  V +R R+ D  LVE LL
Sbjct: 128 LEKEVVLRCREKDLRLVEQLL 148



 Score = 29.9 bits (64), Expect = 2.3
 Identities = 15/46 (32%), Positives = 26/46 (56%)
 Frame = +1

Query: 553 VDTENFLSPDTCGGIELVAARGRIQDQQHFWSLAWS*FAQQLLPEI 690
           +D +NFL  ++ GG+EL A  G+I+      S      A Q++P++
Sbjct: 167 LDKQNFLPSESAGGVELSARAGKIKVSSTLES-RLELIANQIVPQV 211


>Z81071-2|CAB03012.1|  618|Caenorhabditis elegans Hypothetical
           protein F28F8.2 protein.
          Length = 618

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -2

Query: 347 LHQVHYVRDLHALSVPSDELG 285
           LH++ YV D H + VP D  G
Sbjct: 515 LHKLDYVADAHVVGVPDDRYG 535


>U28730-5|AAA68259.1|  470|Caenorhabditis elegans Hypothetical
           protein K10B2.2a protein.
          Length = 470

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 18/42 (42%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = -1

Query: 717 GCVRKRALRYLRQQLLGES-APSETPEVLLILNTSPGCNQLD 595
           G +R    +YL   L   S AP++ P VL  LN  PGC+ LD
Sbjct: 43  GYLRAWTDKYLHYWLTESSRAPTQDPLVLW-LNGGPGCSSLD 83


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,288,369
Number of Sequences: 27780
Number of extensions: 318232
Number of successful extensions: 946
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 903
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 945
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2029935014
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)