Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0194.Seq
         (765 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC713.03 |||D-lactate dehydrogenase |Schizosaccharomyces pombe...    29   0.96 
SPAC24H6.11c |||sulfate transporter |Schizosaccharomyces pombe|c...    26   5.1  
SPCC1739.06c |||uroporphyrin methyltransferase |Schizosaccharomy...    25   9.0  

>SPBC713.03 |||D-lactate dehydrogenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 526

 Score = 28.7 bits (61), Expect = 0.96
 Identities = 25/77 (32%), Positives = 39/77 (50%), Gaps = 3/77 (3%)
 Frame = -1

Query: 264 LRLHVVDCKPEEEIDKYHNPLNKIICEETIRLGGSMVHHHGIG---KHRVHWSKLEHGSA 94
           L L++   + ++ ++K   P    + E   R  GS+   HG+G   K  V +SK +    
Sbjct: 449 LHLNIAVRQFDKRVEKCLEPW---VYEWVSRHRGSISAEHGLGLLKKPFVGYSKSKE--M 503

Query: 93  WALLEGLKKQFDPNGIM 43
             L++ LK  FDPNGIM
Sbjct: 504 IHLMKTLKNVFDPNGIM 520


>SPAC24H6.11c |||sulfate transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 958

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 16/61 (26%), Positives = 29/61 (47%)
 Frame = +3

Query: 459 GSHFIRSPVQVVKPGFDSLLSTRWHCG*RATISAIPSPVTFAMRGLPSAIKISTHFPSAK 638
           GS  + + V+V     +  +S  W     A++SA+  P+TFA   +P  +  +  F   +
Sbjct: 300 GSFLVLTAVEV-SSRLEGSVSFNW-----ASLSALFQPMTFAKWSIPLFLSSALEFAQQR 353

Query: 639 W 641
           W
Sbjct: 354 W 354


>SPCC1739.06c |||uroporphyrin methyltransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 496

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = -3

Query: 460 PNVCRSSKPATWALPP 413
           P++C  + PATW+ PP
Sbjct: 122 PSLCSFTLPATWSEPP 137


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,353,721
Number of Sequences: 5004
Number of extensions: 72190
Number of successful extensions: 204
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 196
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 204
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 367316502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)