Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0194.Seq
         (765 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0627 + 4685077-4685155,4685978-4686336,4686761-4686862,468...    37   0.015
01_01_0917 + 7238721-7239078,7239590-7239957                           30   2.3  
09_04_0323 - 16679565-16679939,16680328-16680660,16680721-166810...    29   4.1  
03_06_0436 - 33910321-33910851                                         29   4.1  
02_05_1336 + 35773629-35773856,35773931-35774085,35774217-357745...    29   4.1  
10_07_0190 + 13931399-13931600,13931720-13932003,13932158-13933303     29   5.4  
01_06_0895 - 32804433-32804744,32804948-32805163,32805301-328056...    28   9.4  
01_03_0175 + 13450869-13451013,13451293-13451372,13451417-134522...    28   9.4  

>07_01_0627 +
           4685077-4685155,4685978-4686336,4686761-4686862,
           4687528-4687598,4687871-4687989,4688327-4688422,
           4688527-4688636,4688734-4688814,4689124-4689224,
           4689663-4689771,4689971-4690076,4690140-4690225,
           4690324-4690449,4690816-4690902
          Length = 543

 Score = 37.1 bits (82), Expect = 0.015
 Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 3/70 (4%)
 Frame = -1

Query: 222 DKYHNPLNKIICEETIRLGGSMVHHHGIG---KHRVHWSKLEHGSAWALLEGLKKQFDPN 52
           DK    +   + E T +  GS+   HG+G     ++H+SK     A  L+  +KK  DPN
Sbjct: 472 DKMLAQIEPFVYEWTSKQRGSISAEHGLGLMKAEKIHYSK--SSEAVQLMASIKKLLDPN 529

Query: 51  GIMNTGTIYP 22
            I+N   + P
Sbjct: 530 SILNPYKVLP 539


>01_01_0917 + 7238721-7239078,7239590-7239957
          Length = 241

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 18/50 (36%), Positives = 22/50 (44%)
 Frame = +1

Query: 400 QPDTSVVKPMLPVLRICTRSAATLSGPQFRLLNQVSTACCPRAGIAGSGQ 549
           QPD S+     P L  CTRS+A  S        ++   CC   G  G GQ
Sbjct: 68  QPDASLAAAFHPCLPACTRSSARSS--------ELIARCCCACGFGGVGQ 109


>09_04_0323 -
           16679565-16679939,16680328-16680660,16680721-16681032,
           16683590-16683825,16683972-16684239
          Length = 507

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 14/31 (45%), Positives = 21/31 (67%)
 Frame = +2

Query: 182 SSQMILLSGLWYLSISSSGLQSTTCNRRRST 274
           SS  +L+  L+  + SSSG++S +C RRR T
Sbjct: 461 SSTTVLVHVLYQSTSSSSGIRSWSCPRRRCT 491


>03_06_0436 - 33910321-33910851
          Length = 176

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 15/41 (36%), Positives = 20/41 (48%)
 Frame = +1

Query: 334 ACGNSVRIRLITLS*ISWMQLQQPDTSVVKPMLPVLRICTR 456
           AC  + R RL T +  SW + +   TS   P+ P  R C R
Sbjct: 136 ACSPATRPRLATTAATSWRESRAAATSSSPPLRPQRRSCGR 176


>02_05_1336 +
           35773629-35773856,35773931-35774085,35774217-35774549,
           35774615-35774927,35776992-35777168,35777281-35777397,
           35777532-35777698,35777800-35778024,35778127-35778448,
           35778542-35778786,35778993-35779131,35779212-35779304,
           35779509-35779577
          Length = 860

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = -3

Query: 676 LYDAEDGTQHFTHFADGKCVLIFMAEGNPRIAKVTG 569
           LY  ED  +H  H AD    +IF      +I  +TG
Sbjct: 562 LYSKEDNNEHIGHLADRSKPIIFSMARLDKIKNITG 597


>10_07_0190 + 13931399-13931600,13931720-13932003,13932158-13933303
          Length = 543

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -1

Query: 444 PQNRQHGLYHRSIRLLELHPRNLRKRY 364
           P +R H  +   IR+L+ HP  L ++Y
Sbjct: 44  PLSRAHDAFFHDIRILDFHPAELYEKY 70


>01_06_0895 -
           32804433-32804744,32804948-32805163,32805301-32805642,
           32805778-32806020,32806130-32806582,32806898-32807113,
           32808360-32808432,32808750-32808790,32809027-32809118,
           32809222-32809333,32810003-32810078,32810154-32810301,
           32811195-32811336,32812120-32812196,32813568-32813619
          Length = 864

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 14/71 (19%), Positives = 30/71 (42%), Gaps = 1/71 (1%)
 Frame = -2

Query: 545 PLPAMPAR-GQQAVETWFNNLNWGPDKVAAERVQILKTGNMGFTTEVSGCWSCIHEIYES 369
           P+P  P   G +  + W + +  G  ++   R   + +  + +       WS  H     
Sbjct: 698 PIPVGPGPWGGEGGKPWDDGVYTGVKQIYIMRADFIGSVQIEYDRSGQSIWSTRHGNGGQ 757

Query: 368 VINRIRTEFPH 336
           + +RI+ ++PH
Sbjct: 758 ITHRIKLDYPH 768


>01_03_0175 +
           13450869-13451013,13451293-13451372,13451417-13452240,
           13452287-13452638
          Length = 466

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = -3

Query: 358 VFVLSSRTPTTSPCWAVIPLIAIRTAPTCTSS 263
           V+ +       SP WA +PL  + T+  C S+
Sbjct: 131 VYAIKLMVAAASPSWATVPLPMVHTSTGCCSA 162


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,208,011
Number of Sequences: 37544
Number of extensions: 550826
Number of successful extensions: 1641
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1574
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1641
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2051430072
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)