Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ps4M0194.Seq
(765 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_6632| Best HMM Match : FAD_binding_4 (HMM E-Value=1.70006e-41) 46 3e-05
SB_27851| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.062
SB_3866| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.33
SB_30324| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.77
SB_7437| Best HMM Match : PAS (HMM E-Value=7.2e-14) 31 1.3
SB_54228| Best HMM Match : TBCC (HMM E-Value=7.8) 30 1.8
SB_45611| Best HMM Match : p450 (HMM E-Value=0) 30 1.8
SB_24810| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.3
SB_55426| Best HMM Match : SH3_1 (HMM E-Value=1.90002e-41) 29 5.4
SB_46245| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.4
SB_21299| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.2
SB_33401| Best HMM Match : F5_F8_type_C (HMM E-Value=0) 28 7.2
SB_57724| Best HMM Match : F5_F8_type_C (HMM E-Value=0) 28 9.5
SB_17218| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.5
SB_55154| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.5
>SB_6632| Best HMM Match : FAD_binding_4 (HMM E-Value=1.70006e-41)
Length = 482
Score = 46.4 bits (105), Expect = 3e-05
Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Frame = -1
Query: 186 EETIRLGGSMVHHHGIGKHRVHW-SKLEHGSAWALLEGLKKQFDPNGIMNTGTIY 25
+E + GGS+ HHHG+GK R W K +L+ +K+ DP I G +Y
Sbjct: 428 DEILANGGSLSHHHGVGKLRKKWLPKTVSNVGMEMLKAVKRAIDPKNIFGNGNLY 482
>SB_27851| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 358
Score = 35.1 bits (77), Expect = 0.062
Identities = 20/76 (26%), Positives = 38/76 (50%), Gaps = 1/76 (1%)
Frame = -1
Query: 252 VVDCKPEEEIDKYHNPLNKIICEETIRLGGSMVHHHGIGKHRVHWSKLEHG-SAWALLEG 76
V+D E+EI + + + +GG+ HGIG+ ++ + E G S +++
Sbjct: 281 VIDTSNEKEIQNAKD-FTLRLGRRALAVGGTCTGEHGIGRGKLALLEEEVGPSGIEVMKQ 339
Query: 75 LKKQFDPNGIMNTGTI 28
+K+ DP +MN G +
Sbjct: 340 IKQMLDPKNLMNPGKV 355
>SB_3866| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1178
Score = 32.7 bits (71), Expect = 0.33
Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Frame = -2
Query: 473 DKVAAERVQILKTGNMGFTTEVS-GCWSCIHEIYESVINRIRTEFPHADDITMLG 312
D V+ E VQIL+TGN + S GC + IY+S+ N + + + I ++G
Sbjct: 1057 DVVSGEFVQILRTGNSHWVCASSVGCEPGMVNIYDSLYNNVIADENESQIICLMG 1111
>SB_30324| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 336
Score = 31.5 bits (68), Expect = 0.77
Identities = 13/33 (39%), Positives = 22/33 (66%)
Frame = +2
Query: 614 QHAFSVGKMGEVLGAIFSVIQTSD*RTIPFXHD 712
+HAFSV K+ +VLG ++ +T ++I + HD
Sbjct: 34 EHAFSVHKIPDVLGCLYKCQRTPQCQSINYLHD 66
>SB_7437| Best HMM Match : PAS (HMM E-Value=7.2e-14)
Length = 505
Score = 30.7 bits (66), Expect = 1.3
Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Frame = -2
Query: 452 VQILKTGNMGFTTEVSGCWSCIHEI-YESVINRIRTEFPHADD-ITMLGGHSSHSYQN 285
V I +T GFTT V+ WS I + YE + + H DD IT+L G + + Q+
Sbjct: 267 VGIFRTDAQGFTTYVNPRWSEISGLPYEKALGNGWHDSVHEDDRITLLNGWENATDQH 324
>SB_54228| Best HMM Match : TBCC (HMM E-Value=7.8)
Length = 330
Score = 30.3 bits (65), Expect = 1.8
Identities = 16/40 (40%), Positives = 20/40 (50%)
Frame = -2
Query: 374 ESVINRIRTEFPHADDITMLGGHSSHSYQNGTNMYFVYDY 255
E+ ++RTEF DD LGG +H N N YDY
Sbjct: 45 EAAYQKLRTEFRTGDDFRFLGGPINHGLGNVYN----YDY 80
>SB_45611| Best HMM Match : p450 (HMM E-Value=0)
Length = 847
Score = 30.3 bits (65), Expect = 1.8
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = -3
Query: 361 TVFVLSSRTPTTSPCWAVIPLI 296
TVF+ S T TS CWA++ LI
Sbjct: 643 TVFIAGSETTATSLCWAILYLI 664
>SB_24810| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 497
Score = 29.9 bits (64), Expect = 2.3
Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 5/37 (13%)
Frame = +3
Query: 630 SAKWVKCWVP-----SSASYKRAIDGRYPSXMIFNAG 725
+++W+KCW SSAS++ +GR PS I G
Sbjct: 262 TSRWLKCWRATTDGWSSASFRSGCNGRGPSVTIVRVG 298
>SB_55426| Best HMM Match : SH3_1 (HMM E-Value=1.90002e-41)
Length = 689
Score = 28.7 bits (61), Expect = 5.4
Identities = 20/60 (33%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Frame = +1
Query: 391 QLQQPDTSVVKPMLPVLRICTRSAATLSGPQFRLLNQVSTACCPRAG-IAGSGQRFPQSL 567
Q Q PDT+ ++P P L + +S A Q + Q +T+ AG +G G PQ L
Sbjct: 78 QAQSPDTTPLEPEKPHLEVSVKSLAASISQQL-VGGQQATSRSETAGPKSGGGSLAPQGL 136
>SB_46245| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 285
Score = 28.7 bits (61), Expect = 5.4
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = -3
Query: 367 LLTVFVLSSRTPTTSPCWAVIPLIAIRTAPTCTSSTITR 251
L ++FV TP + +PLIA+ + P TSS++ R
Sbjct: 60 LRSLFVAVPSTPKLTFSSLALPLIAVASTPILTSSSLAR 98
>SB_21299| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2630
Score = 28.3 bits (60), Expect = 7.2
Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = +1
Query: 385 WMQLQQPDTSVVKPMLPVLRICTRSAATLSGP-QFRLLNQVSTA 513
W+Q+ ++ V P P +R CT + P R+LNQ ST+
Sbjct: 579 WVQIAVFNSKGVGPRSPAVRRCTDQDVPSAPPSNLRVLNQTSTS 622
>SB_33401| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
Length = 4277
Score = 28.3 bits (60), Expect = 7.2
Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
Frame = +1
Query: 520 PRAGIAG-SGQRFPQSLRPSPSQCEGYLQP*RSARIFRRQNG*SVGCHLQRHTNER 684
P+A G +R P + S+ YL P AR+ ++ G GC RH N +
Sbjct: 824 PKARALGVQSRRIPNRALTASSKWNKYLAP-FLARLHNKKKGRMAGCWAARHNNRK 878
>SB_57724| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
Length = 3804
Score = 27.9 bits (59), Expect = 9.5
Identities = 21/60 (35%), Positives = 25/60 (41%), Gaps = 3/60 (5%)
Frame = -2
Query: 647 LHP---FCRRKMRADLYG*R*PSHCEGDGRRDCGNRCPLPAMPARGQQAVETWFNNLNWG 477
+HP F MR +LYG R G G N C LP P R + + WF N G
Sbjct: 2093 IHPKSWFGHISMRVELYGRR-----RGGGNNK--NVCSLPLRPGRCRARMVMWFYNKRTG 2145
>SB_17218| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 44
Score = 27.9 bits (59), Expect = 9.5
Identities = 11/32 (34%), Positives = 16/32 (50%)
Frame = -2
Query: 179 PFASAVRWCTTTVSVNIAFTGANWNTAARGRC 84
PFASA W + + F + + A RG+C
Sbjct: 12 PFASARSWAAYRKGIGLIFPNRDADIAVRGKC 43
>SB_55154| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 245
Score = 27.9 bits (59), Expect = 9.5
Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Frame = +1
Query: 568 RPSPSQCEGYLQP*RSARIFRRQNG*SVGC--HLQRHTNERLT 690
+P+ C ++Q ++R+ R+N GC H+Q H+ RLT
Sbjct: 165 KPTKGGCTFHVQGHSTSRLTHRKNQRRGGCTCHVQGHSTSRLT 207
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,041,806
Number of Sequences: 59808
Number of extensions: 582381
Number of successful extensions: 1868
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1716
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1866
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2072022557
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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