Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0194.Seq
         (765 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II ...    24   1.8  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    22   5.4  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   7.2  
AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.              22   7.2  
AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta...    22   7.2  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    22   7.2  

>AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II
           protein.
          Length = 190

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 11/44 (25%), Positives = 21/44 (47%)
 Frame = +2

Query: 137 PIPWWCTIEPPRRMVSSQMILLSGLWYLSISSSGLQSTTCNRRR 268
           P P W T+ P  + + +QM+ ++    ++ S +      C R R
Sbjct: 132 PSPEWDTVTPEAKNLINQMLTVNPSKRITASEALKHPWICQRER 175


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 10/39 (25%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = +2

Query: 533 LRVAGNDFRNPFARHLRNARVTFSHKDQHAFSVGK-MGE 646
           +++AG+  R+   + ++ A++  + + QH  S  + MGE
Sbjct: 384 VQIAGDSSRSFALKQMKKAQIVETRQQQHIMSEKRIMGE 422


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = +2

Query: 50  PLGSNCFFSPSSNAHALPCSSL 115
           P G  C+   + N +A+ CS L
Sbjct: 762 PAGCKCYNDRTWNTNAVDCSGL 783


>AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.
          Length = 145

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 8/27 (29%), Positives = 15/27 (55%)
 Frame = -1

Query: 81  EGLKKQFDPNGIMNTGTIYPIEK*CVR 1
           +G+K   + NG+M      P+E  C++
Sbjct: 113 DGIKLMNEENGVMEIKIREPVECKCIK 139


>AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta
           protein precursor protein.
          Length = 145

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 8/27 (29%), Positives = 15/27 (55%)
 Frame = -1

Query: 81  EGLKKQFDPNGIMNTGTIYPIEK*CVR 1
           +G+K   + NG+M      P+E  C++
Sbjct: 113 DGIKLMNEENGVMEIKIREPVECKCIK 139


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = -3

Query: 721 ALKIMXEGYRPSIARLYDAEDGTQHFTHFADGK 623
           ALK        S+A L DAE+  +   +  DG+
Sbjct: 449 ALKPFIPAVTKSLASLTDAENSRRAMENLGDGR 481


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 228,781
Number of Sequences: 438
Number of extensions: 5451
Number of successful extensions: 32
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 23911269
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)