Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0191.Seq
         (953 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0294 + 22022630-22024006,22024109-22024234,22024319-220244...    30   2.4  
11_06_0278 - 21854859-21855101,21855529-21855587,21855684-218557...    30   2.4  
09_02_0036 + 3217163-3217584,3217752-3218322                           30   2.4  
12_01_0426 - 3356350-3356745,3357604-3357921                           29   5.5  
03_02_0828 - 11592080-11592171,11592288-11592354,11592748-115928...    29   5.5  
04_04_0214 - 23674270-23676858,23677574-23680843,23680941-236811...    28   9.5  
01_06_1061 - 34169469-34169624,34170837-34170938,34171029-341711...    28   9.5  

>11_06_0294 +
           22022630-22024006,22024109-22024234,22024319-22024423,
           22024525-22024659,22024798-22024847,22026487-22026545,
           22026819-22026928,22027941-22028174,22028278-22028377,
           22028699-22028829,22029834-22029914,22029970-22030128
          Length = 888

 Score = 30.3 bits (65), Expect = 2.4
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = +3

Query: 585 LNRLAAHPPFASWRNSEEARTDRPSQQLRSXNGRMGXL 698
           L+R +   PF SW N  +A  D+ +  L   NGR   L
Sbjct: 399 LSRPSRQDPFTSWDNMRQACLDKGTHALGKLNGRAAAL 436


>11_06_0278 -
           21854859-21855101,21855529-21855587,21855684-21855711,
           21855812-21856702,21856792-21857011,21857638-21857687,
           21863174-21863284,21863379-21863483,21863568-21863693,
           21863796-21865187
          Length = 1074

 Score = 30.3 bits (65), Expect = 2.4
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = +3

Query: 585 LNRLAAHPPFASWRNSEEARTDRPSQQLRSXNGRMGXL 698
           L+R +   PF SW N  +A  D+ +  L   NGR   L
Sbjct: 404 LSRPSRQDPFTSWDNMRQACLDKGTHALGKLNGRAAAL 441


>09_02_0036 + 3217163-3217584,3217752-3218322
          Length = 330

 Score = 30.3 bits (65), Expect = 2.4
 Identities = 13/28 (46%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
 Frame = +1

Query: 523 ITIHWPSFYNVV-TGKTLALPNLIALQH 603
           I+  W  F N+V +G TL++PN + LQH
Sbjct: 69  ISAGWSRFINLVQSGPTLSIPNYVLLQH 96


>12_01_0426 - 3356350-3356745,3357604-3357921
          Length = 237

 Score = 29.1 bits (62), Expect = 5.5
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = +3

Query: 513 SESYYNSLAVVLQRRDWEN 569
           SESYY    V +Q RDW N
Sbjct: 203 SESYYFKFGVYMQHRDWSN 221


>03_02_0828 -
           11592080-11592171,11592288-11592354,11592748-11592837,
           11592914-11592967,11593109-11593169,11593252-11593319,
           11593513-11593596,11594257-11594349,11594513-11594593,
           11594665-11594793,11595193-11595273,11595401-11595484,
           11596816-11596842,11597027-11597094,11597481-11597619
          Length = 405

 Score = 29.1 bits (62), Expect = 5.5
 Identities = 19/44 (43%), Positives = 27/44 (61%), Gaps = 7/44 (15%)
 Frame = -3

Query: 549 VKRRPVNCN----TTHYRR-IGY-RAPPRVFFFFFYNKI-VCFT 439
           ++ R +N N    T H+R  IGY R PP V+FF+ ++ I V FT
Sbjct: 314 IRGRKINSNQFSVTEHFREAIGYPRPPPGVYFFYEFSPIKVDFT 357


>04_04_0214 - 23674270-23676858,23677574-23680843,23680941-23681119,
            23681200-23681559,23681645-23682086,23682199-23682332,
            23682479-23682680
          Length = 2391

 Score = 28.3 bits (60), Expect = 9.5
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = -3

Query: 174  TPTKSHQGDLSKLISRRGLSEGVYFALCRP 85
            TPT+S+ GD +K+   R   + ++  LC+P
Sbjct: 2155 TPTRSNAGDATKVTLARTWYQALWATLCQP 2184


>01_06_1061 -
           34169469-34169624,34170837-34170938,34171029-34171180,
           34172087-34172153,34172239-34172419,34172655-34172778,
           34174775-34174871,34175929-34176331,34176729-34176888,
           34177412-34177486,34177714-34177892,34178224-34178303,
           34178561-34179322
          Length = 845

 Score = 28.3 bits (60), Expect = 9.5
 Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 4/54 (7%)
 Frame = -2

Query: 676 QLRNCWEGRSVRASSLLRQLAKGGCAARRLSWVTPGFS----QSRRCKTTASEL 527
           QLR+CW G  +     LR    G      ++  TPG S    ++RRC+  +S++
Sbjct: 503 QLRDCWNGELLHGGKFLR----GRRVETDMAPATPGGSSQLVENRRCQLPSSQI 552


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,152,305
Number of Sequences: 37544
Number of extensions: 488692
Number of successful extensions: 1043
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1019
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1043
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2752963900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)