Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0191.Seq
         (953 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g36380.1 68415.m04464 ABC transporter family protein related ...    29   4.5  
At4g37250.1 68417.m05273 leucine-rich repeat family protein / pr...    29   6.0  
At2g18760.1 68415.m02184 SNF2 domain-containing protein / helica...    29   6.0  

>At2g36380.1 68415.m04464 ABC transporter family protein related to
            multi drug resistance proteins and P-glycoproteins
          Length = 1453

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -3

Query: 513  YRRIGYRAPPRVFFFFFYNKIVCFTYY 433
            Y  IGY      FF+F+Y  + CF Y+
Sbjct: 1299 YSMIGYDWTVVKFFWFYYYMLTCFVYF 1325


>At4g37250.1 68417.m05273 leucine-rich repeat family protein /
           protein kinase family protein contains protein kinase
           domain, Pfam:PF00069; contains leucine-rich repeats,
           Pfam:PF00560
          Length = 768

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 19/63 (30%), Positives = 30/63 (47%)
 Frame = +1

Query: 478 NSRGGPVPNSPIVSRITIHWPSFYNVVTGKTLALPNLIALQHIPLSPAGVIAKRPAPIAL 657
           N+  GP+P+SP+      ++ S    + G+    P LI      +S A V    PA  A+
Sbjct: 241 NNLTGPIPDSPVFLNQESNFFSGNPGLCGEPTRNPCLIPSSPSIVSEADVPTSTPAIAAI 300

Query: 658 PNS 666
           PN+
Sbjct: 301 PNT 303


>At2g18760.1 68415.m02184 SNF2 domain-containing protein / helicase
           domain-containing protein similar to SP|Q03468 Excision
           repair protein ERCC-6 (Cockayne syndrome protein CSB)
           {Homo sapiens}; contains PFam profiles PF00271: Helicase
           conserved C-terminal domain, PF00176: SNF2 family
           N-terminal domain
          Length = 1187

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 16/59 (27%), Positives = 26/59 (44%)
 Frame = +1

Query: 505 SPIVSRITIHWPSFYNVVTGKTLALPNLIALQHIPLSPAGVIAKRPAPIALPNSCAAXM 681
           +PI +++T  W  F  V  GK   LP   A   +P++  G     P  ++    CA  +
Sbjct: 575 APIQNKLTELWSLFDFVFPGKLGVLPVFEAEFSVPITVGGYANASPLQVSTAYRCAVVL 633


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,357,762
Number of Sequences: 28952
Number of extensions: 390020
Number of successful extensions: 737
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 718
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 737
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2295205728
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)