Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0183.Seq
         (928 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2 |Schizo...    27   3.8  
SPCC18.02 |||membrane transporter|Schizosaccharomyces pombe|chr ...    26   8.7  
SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase Lkh1|Schi...    26   8.7  

>SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1513

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = +2

Query: 758 LKGSVPSEXVFILMXXSAQPWN 823
           ++ S+PS+ VF L   S++PWN
Sbjct: 394 IQSSLPSKEVFPLEKYSSEPWN 415


>SPCC18.02 |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 448

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 9/19 (47%), Positives = 15/19 (78%)
 Frame = -1

Query: 283 AFDATIPIQLTYIYTFSDM 227
           AFDATIP++L  ++ F+ +
Sbjct: 266 AFDATIPLELKTLFDFNSL 284


>SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase
           Lkh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 690

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 15/51 (29%), Positives = 25/51 (49%)
 Frame = -1

Query: 394 PFIIYVSRLGTPTQPPSLTTASRAGRSVCPPILKSK*AFDATIPIQLTYIY 242
           PF ++  +   P QPPS ++ S  G +V  PI  +   + +T  + L   Y
Sbjct: 44  PFSVHQLQSFVPPQPPSSSSPSTTG-TVAVPINGANAVYPSTNSVSLPQSY 93


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,211,079
Number of Sequences: 5004
Number of extensions: 58541
Number of successful extensions: 105
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 469338710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)