Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ps4M0183.Seq
(928 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0336 + 2587463-2587644,2587888-2588052,2588142-2588355 34 0.18
08_01_0178 - 1509100-1511214 31 1.3
12_01_0333 + 2570807-2571061,2571186-2571397,2571961-2572225,257... 31 1.7
10_08_0308 + 16660751-16661450,16661656-16661819,16662615-166628... 31 1.7
06_03_0079 - 16301056-16301611,16301745-16301906,16306776-163071... 30 3.0
12_01_0484 + 3840020-3840152,3840261-3840390,3840467-3841004 29 4.0
12_01_0136 + 1051853-1052245,1052352-1052807 29 5.2
10_08_0661 + 19656669-19656905,19657390-19657869,19659519-19659800 29 5.2
08_02_0824 + 21561699-21562415,21563294-21563362,21563424-215634... 29 5.2
08_02_0763 + 20924057-20924848 29 5.2
01_06_0695 - 31292622-31293317 29 5.2
11_01_0135 + 1129849-1130244,1131125-1131542,1131986-1132104 29 6.9
12_02_0670 - 21700523-21700932,21701266-21701390,21701476-217016... 28 9.2
11_06_0143 + 20589574-20589684,20590256-20590873,20590943-205910... 28 9.2
04_02_0004 - 8430902-8431210,8431295-8431445,8431542-8431830,843... 28 9.2
03_05_0329 - 23211636-23211857,23211946-23212079,23212170-232124... 28 9.2
>12_01_0336 + 2587463-2587644,2587888-2588052,2588142-2588355
Length = 186
Score = 33.9 bits (74), Expect = 0.18
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = -2
Query: 504 MLHNPPEARCGGPRGPPHTAP 442
+LH PP+ CG P GPP T+P
Sbjct: 19 ILHPPPQKLCGSPGGPPVTSP 39
>08_01_0178 - 1509100-1511214
Length = 704
Score = 31.1 bits (67), Expect = 1.3
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = -2
Query: 387 SSTCPAWALRHSPLPSRPPHEPGGLSALPF 298
+ CPA R + PS PP +P G S PF
Sbjct: 39 ADVCPACNARWTNAPSNPPPQPAGGSTTPF 68
>12_01_0333 +
2570807-2571061,2571186-2571397,2571961-2572225,
2572542-2572841
Length = 343
Score = 30.7 bits (66), Expect = 1.7
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = -2
Query: 504 MLHNPPEARCGGPRGPPHTAP 442
+L PP+ CG P GPP T+P
Sbjct: 21 ILRPPPQKLCGSPGGPPVTSP 41
>10_08_0308 +
16660751-16661450,16661656-16661819,16662615-16662800,
16663297-16663533
Length = 428
Score = 30.7 bits (66), Expect = 1.7
Identities = 12/26 (46%), Positives = 12/26 (46%)
Frame = -2
Query: 492 PPEARCGGPRGPPHTAPAAAESVLNW 415
P RCGG RG PH P A W
Sbjct: 95 PGRQRCGGARGAPHRMPLLANGPTLW 120
>06_03_0079 -
16301056-16301611,16301745-16301906,16306776-16307134,
16307372-16307884
Length = 529
Score = 29.9 bits (64), Expect = 3.0
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Frame = -2
Query: 483 ARCGGPR-GPPHTAPAAAESVLNWCX*TDSNPSSSTCPAWALRHSPLPSRP 334
AR P G P TA +A++ + T+ +P+ + P+ +LRH P RP
Sbjct: 268 ARVHSPNLGQPITAASASKDKNSLNLATELSPTGNLLPSSSLRHEPSAKRP 318
>12_01_0484 + 3840020-3840152,3840261-3840390,3840467-3841004
Length = 266
Score = 29.5 bits (63), Expect = 4.0
Identities = 18/51 (35%), Positives = 23/51 (45%)
Frame = -2
Query: 531 KFCICL*FTMLHNPPEARCGGPRGPPHTAPAAAESVLNWCX*TDSNPSSST 379
K C+CL LH E CGG ++P A + T +N SSST
Sbjct: 217 KICLCLNHLGLHGGDECSCGGSSASSSSSPPPATASSR--AFTFANASSST 265
>12_01_0136 + 1051853-1052245,1052352-1052807
Length = 282
Score = 29.1 bits (62), Expect = 5.2
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = -2
Query: 396 NPSSSTCPAWALRHSPLPSRPPHEPGGLSA 307
+P+++T A ALRH L S PPH P A
Sbjct: 20 SPATATGAACALRHVRLFSPPPHPPSSRPA 49
>10_08_0661 + 19656669-19656905,19657390-19657869,19659519-19659800
Length = 332
Score = 29.1 bits (62), Expect = 5.2
Identities = 11/17 (64%), Positives = 11/17 (64%)
Frame = -2
Query: 492 PPEARCGGPRGPPHTAP 442
PP CG P GPP TAP
Sbjct: 19 PPPRVCGAPGGPPVTAP 35
>08_02_0824 +
21561699-21562415,21563294-21563362,21563424-21563459,
21564533-21564600,21565259-21565277,21565662-21565763,
21566173-21566288,21566501-21566595,21568093-21568264,
21568413-21568493,21569732-21569801,21570106-21570132
Length = 523
Score = 29.1 bits (62), Expect = 5.2
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = -2
Query: 495 NPPEARCGGPRGPPHTAPAAAES 427
+PPE R GG R P H AA+E+
Sbjct: 113 SPPERRRGGDRQPSHPTEAASEA 135
>08_02_0763 + 20924057-20924848
Length = 263
Score = 29.1 bits (62), Expect = 5.2
Identities = 19/41 (46%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = +2
Query: 371 AGH-VDDEGLESVYXHQFRTDSAAAGAVCGGPRGPPQRASG 490
AGH D+E LE+V T +AAA AV GG G A G
Sbjct: 30 AGHRQDEETLEAVLRQPVTTTAAAAAAVEGGGGGGGGGAGG 70
>01_06_0695 - 31292622-31293317
Length = 231
Score = 29.1 bits (62), Expect = 5.2
Identities = 14/36 (38%), Positives = 18/36 (50%)
Frame = -2
Query: 405 TDSNPSSSTCPAWALRHSPLPSRPPHEPGGLSALPF 298
T S+ SSST P+ +PLP P P + PF
Sbjct: 23 TSSSSSSSTSPSHPHHRAPLPPSPRPVPRTIETTPF 58
>11_01_0135 + 1129849-1130244,1131125-1131542,1131986-1132104
Length = 310
Score = 28.7 bits (61), Expect = 6.9
Identities = 13/25 (52%), Positives = 17/25 (68%)
Frame = -2
Query: 396 NPSSSTCPAWALRHSPLPSRPPHEP 322
+P+++T A ALRH L S PPH P
Sbjct: 21 SPATATGAACALRHVRLFSPPPHPP 45
>12_02_0670 -
21700523-21700932,21701266-21701390,21701476-21701651,
21702937-21703128
Length = 300
Score = 28.3 bits (60), Expect = 9.2
Identities = 17/41 (41%), Positives = 20/41 (48%)
Frame = -2
Query: 492 PPEARCGGPRGPPHTAPAAAESVLNWCX*TDSNPSSSTCPA 370
P EARC R PP A AAA ++ C S+ CPA
Sbjct: 27 PEEARCPRERLPPFVAAAAAAALRPSC-----RASAERCPA 62
>11_06_0143 +
20589574-20589684,20590256-20590873,20590943-20591010,
20591159-20591234,20591311-20591372,20591452-20591603,
20591889-20592052,20592129-20592317,20592417-20592538,
20592620-20592827,20593238-20593291,20593457-20593626,
20594265-20594355,20595405-20595529,20596372-20596444,
20596822-20596914,20597482-20597728,20598305-20598364,
20598461-20598590,20599008-20599014
Length = 939
Score = 28.3 bits (60), Expect = 9.2
Identities = 15/38 (39%), Positives = 18/38 (47%)
Frame = +2
Query: 380 VDDEGLESVYXHQFRTDSAAAGAVCGGPRGPPQRASGG 493
+DD+G E +T S AAG GG G R GG
Sbjct: 188 LDDDGEEDKMDEDAKTPSKAAGRGRGGASGGRGRGGGG 225
>04_02_0004 -
8430902-8431210,8431295-8431445,8431542-8431830,
8431873-8432083,8432184-8432380,8432454-8432555,
8432666-8433998
Length = 863
Score = 28.3 bits (60), Expect = 9.2
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = -1
Query: 487 GGALWGPARSATYCTSGGGICSELVLID 404
GGA+W A S +GGG + VL+D
Sbjct: 108 GGAVWTTANSNNVAAAGGGAGATAVLLD 135
>03_05_0329 -
23211636-23211857,23211946-23212079,23212170-23212476,
23212760-23213113
Length = 338
Score = 28.3 bits (60), Expect = 9.2
Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 4/52 (7%)
Frame = -1
Query: 412 LIDRFQPFIIYVSRLGTPTQPPS----LTTASRAGRSVCPPILKSK*AFDAT 269
L+D+ F Y + L PT P S TT R+ S C + ++DAT
Sbjct: 262 LLDKEDVFACYSAMLSQPTSPASKSTTTTTGKRSSSSSCSESTDAASSYDAT 313
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,045,195
Number of Sequences: 37544
Number of extensions: 446074
Number of successful extensions: 1405
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1313
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1404
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2647531240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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