Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0183.Seq
         (928 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_57101| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.0  
SB_22045| Best HMM Match : Amelogenin (HMM E-Value=0.23)               30   2.3  
SB_9653| Best HMM Match : Retrotrans_gag (HMM E-Value=0.05)            30   2.3  
SB_30749| Best HMM Match : FARP (HMM E-Value=0.032)                    30   2.3  
SB_9494| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   2.3  
SB_41405| Best HMM Match : RVT_1 (HMM E-Value=0)                       29   5.3  
SB_9739| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   9.3  

>SB_57101| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 855

 Score = 31.5 bits (68), Expect = 1.0
 Identities = 14/25 (56%), Positives = 15/25 (60%)
 Frame = -2

Query: 393 PSSSTCPAWALRHSPLPSRPPHEPG 319
           PSSS     A   +P PSRPPH PG
Sbjct: 147 PSSSPSKIAAYEPTPDPSRPPHRPG 171


>SB_22045| Best HMM Match : Amelogenin (HMM E-Value=0.23)
          Length = 149

 Score = 30.3 bits (65), Expect = 2.3
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = -2

Query: 429 SVLNWCX*TDSNPSSSTCPAWALRHSPLPSRPPHEP 322
           S +++C  ++ NP+ +  PA +   SP+PS   H P
Sbjct: 13  SNMSYCNTSNPNPNHAYSPATSTAQSPVPSNHQHRP 48


>SB_9653| Best HMM Match : Retrotrans_gag (HMM E-Value=0.05)
          Length = 626

 Score = 30.3 bits (65), Expect = 2.3
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = -2

Query: 393 PSSSTCPAWALRHSPLPSRPPHEPG 319
           PSS+     A   +P PSRPPH PG
Sbjct: 283 PSSNPSKIAAYEPTPDPSRPPHRPG 307


>SB_30749| Best HMM Match : FARP (HMM E-Value=0.032)
          Length = 2565

 Score = 30.3 bits (65), Expect = 2.3
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +1

Query: 424  NRFRRRWCSMWRTARAPTTRLR 489
            NR+RRRW  +WR  R   T +R
Sbjct: 2237 NRYRRRWYPVWRRGRKLVTTIR 2258


>SB_9494| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 670

 Score = 30.3 bits (65), Expect = 2.3
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = -2

Query: 393 PSSSTCPAWALRHSPLPSRPPHEPG 319
           PSS+     A   +P PSRPPH PG
Sbjct: 163 PSSNPSKIAAYEPTPDPSRPPHRPG 187


>SB_41405| Best HMM Match : RVT_1 (HMM E-Value=0)
          Length = 2639

 Score = 29.1 bits (62), Expect = 5.3
 Identities = 13/24 (54%), Positives = 14/24 (58%)
 Frame = -2

Query: 393 PSSSTCPAWALRHSPLPSRPPHEP 322
           PSSS     A   +P PSRPPH P
Sbjct: 66  PSSSPSKIAAYEPTPDPSRPPHRP 89


>SB_9739| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1552

 Score = 28.3 bits (60), Expect = 9.3
 Identities = 14/39 (35%), Positives = 18/39 (46%)
 Frame = -2

Query: 489  PEARCGGPRGPPHTAPAAAESVLNWCX*TDSNPSSSTCP 373
            P+A  G P   P  APAA  S    C  T+   + +T P
Sbjct: 1461 PQAPSGAPAKTPSMAPAAPSSPSQTCHHTNRTATPATTP 1499


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,419,110
Number of Sequences: 59808
Number of extensions: 460756
Number of successful extensions: 991
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 864
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 990
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2693287426
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)