Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0183.Seq
         (928 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U13071-1|AAL65794.1|  462|Caenorhabditis elegans Hypothetical pr...    30   2.7  
Z81064-5|CAB02964.2| 1392|Caenorhabditis elegans Hypothetical pr...    29   3.6  
AY157938-1|AAN35200.1| 1751|Caenorhabditis elegans ANC-1 protein.      29   4.7  
AC006834-1|AAF40010.3| 8545|Caenorhabditis elegans Abnormal nucl...    29   4.7  

>U13071-1|AAL65794.1|  462|Caenorhabditis elegans Hypothetical
           protein T22F7.5 protein.
          Length = 462

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -1

Query: 361 PTQPPSLTTASRAGRSVCPP 302
           PT  PS+T+    G+S+CPP
Sbjct: 146 PTMSPSVTSGGNPGKSLCPP 165


>Z81064-5|CAB02964.2| 1392|Caenorhabditis elegans Hypothetical protein
            F16B12.6 protein.
          Length = 1392

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 24/83 (28%), Positives = 36/83 (43%), Gaps = 5/83 (6%)
 Frame = -1

Query: 466  ARSATYCTSGGGICSELVLIDRFQPFIIYVSRLGTPTQPPSLTTASRAGRSVCPP----- 302
            +R+  +  +G  I    +  D F P+    SR GTP QP    T  R    +C P     
Sbjct: 797  SRAYAFFVAGTAIFPHDINRDDFSPW----SRNGTPDQPTCYRTKVRKLGVICDPQNSTF 852

Query: 301  ILKSK*AFDATIPIQLTYIYTFS 233
            +LK    +  T P  L Y+Y+ +
Sbjct: 853  LLKENTNY-KTCPFHLVYLYSIN 874


>AY157938-1|AAN35200.1| 1751|Caenorhabditis elegans ANC-1 protein.
          Length = 1751

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +1

Query: 451 MWRTARAPTTRLRWIM*HSELKANTKLVNLHTYCEXI 561
           +WRTA + T  LRWI  +++L A        +Y   I
Sbjct: 536 LWRTADSVTLLLRWIKEYTQLNAENPQAKCASYINKI 572


>AC006834-1|AAF40010.3| 8545|Caenorhabditis elegans Abnormal nuclear
           anchorage protein1 protein.
          Length = 8545

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +1

Query: 451 MWRTARAPTTRLRWIM*HSELKANTKLVNLHTYCEXI 561
           +WRTA + T  LRWI  +++L A        +Y   I
Sbjct: 536 LWRTADSVTLLLRWIKEYTQLNAENPQAKCASYINKI 572


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,198,864
Number of Sequences: 27780
Number of extensions: 352599
Number of successful extensions: 896
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 835
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 896
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2381234086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)