Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ps4M0183.Seq
(928 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g54240.1 68416.m05995 hydrolase, alpha/beta fold family prote... 31 0.82
At2g42840.2 68415.m05305 protodermal factor 1 (PDF1) identical t... 31 0.82
At2g42840.1 68415.m05304 protodermal factor 1 (PDF1) identical t... 31 0.82
At1g74300.1 68414.m08604 esterase/lipase/thioesterase family pro... 30 1.9
At5g22460.2 68418.m02620 esterase/lipase/thioesterase family pro... 29 3.3
At5g22460.1 68418.m02619 esterase/lipase/thioesterase family pro... 29 3.3
At3g26510.4 68416.m03309 octicosapeptide/Phox/Bem1p (PB1) domain... 29 3.3
At3g26510.3 68416.m03306 octicosapeptide/Phox/Bem1p (PB1) domain... 29 3.3
At3g26510.2 68416.m03307 octicosapeptide/Phox/Bem1p (PB1) domain... 29 3.3
At3g26510.1 68416.m03308 octicosapeptide/Phox/Bem1p (PB1) domain... 29 3.3
At1g51965.1 68414.m05859 pentatricopeptide (PPR) repeat-containi... 29 5.8
>At3g54240.1 68416.m05995 hydrolase, alpha/beta fold family protein
low similarity to SP|P22862|ESTE_PSEFL Arylesterase (EC
3.1.1.2) (Aryl-ester hydrolase) {Pseudomonas
fluorescens}; contains Pfam profile PF00561: hydrolase,
alpha/beta fold family
Length = 350
Score = 31.5 bits (68), Expect = 0.82
Identities = 12/17 (70%), Positives = 12/17 (70%)
Frame = -2
Query: 492 PPEARCGGPRGPPHTAP 442
PP RCG P GPP TAP
Sbjct: 28 PPPKRCGTPGGPPITAP 44
>At2g42840.2 68415.m05305 protodermal factor 1 (PDF1) identical to
protodermal factor 1 [Arabidopsis thaliana]
gi|4929130|gb|AAD33869
Length = 306
Score = 31.5 bits (68), Expect = 0.82
Identities = 20/66 (30%), Positives = 27/66 (40%)
Frame = -2
Query: 498 HNPPEARCGGPRGPPHTAPAAAESVLNWCX*TDSNPSSSTCPAWALRHSPLPSRPPHEPG 319
H PP + CG P P + + S + T S PS + P H+P P PP G
Sbjct: 51 HTPPSSNCGSPPYDPSPSTPSHPSPPSHTP-TPSTPSHTPTP-HTPSHTPTPHTPPCNCG 108
Query: 318 GLSALP 301
+ P
Sbjct: 109 SPPSHP 114
>At2g42840.1 68415.m05304 protodermal factor 1 (PDF1) identical to
protodermal factor 1 [Arabidopsis thaliana]
gi|4929130|gb|AAD33869
Length = 306
Score = 31.5 bits (68), Expect = 0.82
Identities = 20/66 (30%), Positives = 27/66 (40%)
Frame = -2
Query: 498 HNPPEARCGGPRGPPHTAPAAAESVLNWCX*TDSNPSSSTCPAWALRHSPLPSRPPHEPG 319
H PP + CG P P + + S + T S PS + P H+P P PP G
Sbjct: 51 HTPPSSNCGSPPYDPSPSTPSHPSPPSHTP-TPSTPSHTPTP-HTPSHTPTPHTPPCNCG 108
Query: 318 GLSALP 301
+ P
Sbjct: 109 SPPSHP 114
>At1g74300.1 68414.m08604 esterase/lipase/thioesterase family
protein low similarity to
2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase
[Rhodococcus sp. RHA1] GI:8978311; contains Interpro
entry IPR000379
Length = 346
Score = 30.3 bits (65), Expect = 1.9
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = -2
Query: 507 TMLHNPPEARCGGPRGPPHTAP 442
++L PP CG P GPP TAP
Sbjct: 22 SILKPPPPNLCGSPGGPPITAP 43
>At5g22460.2 68418.m02620 esterase/lipase/thioesterase family
protein low similarity to
2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase
[Rhodococcus sp. RHA1] GI:8978311, SP|Q02104 Lipase 1
precursor (EC 3.1.1.3) (Triacylglycerol lipase)
{Psychrobacter immobilis}; contains Interpro entry
IPR000379
Length = 340
Score = 29.5 bits (63), Expect = 3.3
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = -2
Query: 555 FAVSMQIYKFCICL*FTMLHNPPEARCGGPRGPPHTAP 442
F+V++ I I + PP CG P GPP T+P
Sbjct: 3 FSVTVAILVCLIGYIYRSFKPPPPRICGHPNGPPVTSP 40
>At5g22460.1 68418.m02619 esterase/lipase/thioesterase family
protein low similarity to
2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase
[Rhodococcus sp. RHA1] GI:8978311, SP|Q02104 Lipase 1
precursor (EC 3.1.1.3) (Triacylglycerol lipase)
{Psychrobacter immobilis}; contains Interpro entry
IPR000379
Length = 340
Score = 29.5 bits (63), Expect = 3.3
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = -2
Query: 555 FAVSMQIYKFCICL*FTMLHNPPEARCGGPRGPPHTAP 442
F+V++ I I + PP CG P GPP T+P
Sbjct: 3 FSVTVAILVCLIGYIYRSFKPPPPRICGHPNGPPVTSP 40
>At3g26510.4 68416.m03309 octicosapeptide/Phox/Bem1p (PB1)
domain-containing protein contains Pfam profile
PF00564: PB1 domain
Length = 196
Score = 29.5 bits (63), Expect = 3.3
Identities = 17/55 (30%), Positives = 27/55 (49%)
Frame = -2
Query: 495 NPPEARCGGPRGPPHTAPAAAESVLNWCX*TDSNPSSSTCPAWALRHSPLPSRPP 331
NPP++ G + PP P A S + ++ +SS+ + +L PLP PP
Sbjct: 113 NPPKSAAGSKKSPP---PLALPSSTTTSSSSTTSSTSSSPRSPSLSKPPLPPSPP 164
>At3g26510.3 68416.m03306 octicosapeptide/Phox/Bem1p (PB1)
domain-containing protein contains Pfam profile
PF00564: PB1 domain
Length = 218
Score = 29.5 bits (63), Expect = 3.3
Identities = 17/55 (30%), Positives = 27/55 (49%)
Frame = -2
Query: 495 NPPEARCGGPRGPPHTAPAAAESVLNWCX*TDSNPSSSTCPAWALRHSPLPSRPP 331
NPP++ G + PP P A S + ++ +SS+ + +L PLP PP
Sbjct: 135 NPPKSAAGSKKSPP---PLALPSSTTTSSSSTTSSTSSSPRSPSLSKPPLPPSPP 186
>At3g26510.2 68416.m03307 octicosapeptide/Phox/Bem1p (PB1)
domain-containing protein contains Pfam profile
PF00564: PB1 domain
Length = 196
Score = 29.5 bits (63), Expect = 3.3
Identities = 17/55 (30%), Positives = 27/55 (49%)
Frame = -2
Query: 495 NPPEARCGGPRGPPHTAPAAAESVLNWCX*TDSNPSSSTCPAWALRHSPLPSRPP 331
NPP++ G + PP P A S + ++ +SS+ + +L PLP PP
Sbjct: 113 NPPKSAAGSKKSPP---PLALPSSTTTSSSSTTSSTSSSPRSPSLSKPPLPPSPP 164
>At3g26510.1 68416.m03308 octicosapeptide/Phox/Bem1p (PB1)
domain-containing protein contains Pfam profile
PF00564: PB1 domain
Length = 196
Score = 29.5 bits (63), Expect = 3.3
Identities = 17/55 (30%), Positives = 27/55 (49%)
Frame = -2
Query: 495 NPPEARCGGPRGPPHTAPAAAESVLNWCX*TDSNPSSSTCPAWALRHSPLPSRPP 331
NPP++ G + PP P A S + ++ +SS+ + +L PLP PP
Sbjct: 113 NPPKSAAGSKKSPP---PLALPSSTTTSSSSTTSSTSSSPRSPSLSKPPLPPSPP 164
>At1g51965.1 68414.m05859 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 650
Score = 28.7 bits (61), Expect = 5.8
Identities = 14/35 (40%), Positives = 17/35 (48%)
Frame = -2
Query: 717 LRSRRFXSIERYVRPNXXYYEXKHEYXVTSQLTGG 613
LR R F S+ RPN +Y K+ VTS G
Sbjct: 4 LRRRFFNSVNTITRPNRRHYATKYVAKVTSSSPSG 38
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,898,127
Number of Sequences: 28952
Number of extensions: 320279
Number of successful extensions: 678
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 642
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 674
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2207676696
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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