Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0181.Seq
         (897 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A4GHU7 Cluster: Putative undecaprenol kinase; n=1; uncu...    33   7.5  
UniRef50_A7HN43 Cluster: Methyltransferase type 11; n=1; Fervido...    33   9.9  

>UniRef50_A4GHU7 Cluster: Putative undecaprenol kinase; n=1;
           uncultured marine bacterium EB0_39H12|Rep: Putative
           undecaprenol kinase - uncultured marine bacterium
           EB0_39H12
          Length = 260

 Score = 33.5 bits (73), Expect = 7.5
 Identities = 16/46 (34%), Positives = 26/46 (56%)
 Frame = +2

Query: 458 LPTCYHFNRDIKNIVLSIFEDKIIIK*RMNVEFLIFQY*NRLYGLI 595
           L  C++F +D+ +IV SI EDK + K +++   +I      L G I
Sbjct: 52  LAVCFYFRQDLISIVTSIVEDKSLFKNQLSKNLIIASIPTLLLGFI 97


>UniRef50_A7HN43 Cluster: Methyltransferase type 11; n=1;
           Fervidobacterium nodosum Rt17-B1|Rep: Methyltransferase
           type 11 - Fervidobacterium nodosum Rt17-B1
          Length = 885

 Score = 33.1 bits (72), Expect = 9.9
 Identities = 13/31 (41%), Positives = 22/31 (70%)
 Frame = +2

Query: 440 QLCFFCLPTCYHFNRDIKNIVLSIFEDKIII 532
           +L FFCLP   +F +DI  I+ +I+E K+++
Sbjct: 144 RLAFFCLPGLDNFIKDIAQILSNIYEIKLVV 174


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 797,579,760
Number of Sequences: 1657284
Number of extensions: 15881495
Number of successful extensions: 34995
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 32966
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34977
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 81161904978
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)