Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0181.Seq
         (897 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1620.12c |||GTPase activating protein |Schizosaccharomyces p...    28   1.6  
SPAPB1E7.05 |gde1||glycerophosphoryl diester phosphodiesterase G...    27   3.6  

>SPCC1620.12c |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 595

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 14/53 (26%), Positives = 24/53 (45%), Gaps = 4/53 (7%)
 Frame = +3

Query: 690 WSDAPVFESXAGTNFSNXIRT----PPMARLTSTVKEXNIRV*KPSRKXXWRN 836
           W+  P+F      + SN   T    PP+  +   +K+ N  +  P RK  W++
Sbjct: 130 WASVPLFAYDLPPDPSNPNATSSSPPPLTPILELIKQNNFCIPSPCRKLVWQS 182


>SPAPB1E7.05 |gde1||glycerophosphoryl diester phosphodiesterase
           Gde1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1076

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +2

Query: 413 VIFFLQTI*QLCFFCLPTCYHFNRDIKNIVL 505
           V++FL+ + Q+C       YH NR +  I+L
Sbjct: 218 VLYFLEVLKQICSVVYVDSYHSNRLLSRILL 248


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,463,768
Number of Sequences: 5004
Number of extensions: 71262
Number of successful extensions: 162
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 452494940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)