Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0181.Seq
         (897 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1805 - 39999987-40000169,40000648-40000974,40001724-400020...    31   1.6  
08_02_0632 + 19515234-19515374,19515489-19515656,19518907-195189...    29   6.6  

>01_06_1805 -
           39999987-40000169,40000648-40000974,40001724-40002017,
           40002112-40002231,40002714-40002776,40003150-40003310,
           40003864-40004035
          Length = 439

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -2

Query: 785 LHRGSQSCHWWSTYXIGKIGTRXRFEHRCIAP 690
           L  G + C ++S Y I K G   +F+H  +AP
Sbjct: 377 LRPGEELCKFYSRYGICKFGANCKFDHPTMAP 408


>08_02_0632 +
           19515234-19515374,19515489-19515656,19518907-19518993,
           19519551-19519685,19519778-19519882,19519968-19520059,
           19520147-19520252,19520320-19520424,19520516-19520929
          Length = 450

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = -3

Query: 547 IHTSLNYNLIFENTQHDIFNIAIEMVTRWET 455
           +H  L  NL++  T+HD++ +  + VT W +
Sbjct: 129 VHFQLR-NLVWATTKHDVYTVHNQSVTHWSS 158


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,042,011
Number of Sequences: 37544
Number of extensions: 372791
Number of successful extensions: 622
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 613
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 622
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2530383840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)