Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0181.Seq
         (897 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82055-7|CAB04849.1|  387|Caenorhabditis elegans Hypothetical pr...    29   4.5  
AL021479-1|CAA16321.2|  346|Caenorhabditis elegans Hypothetical ...    29   6.0  

>Z82055-7|CAB04849.1|  387|Caenorhabditis elegans Hypothetical
           protein T26H2.8 protein.
          Length = 387

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 22/55 (40%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
 Frame = -1

Query: 633 LKKRIYGT-RYRLRIKPYNRF*Y*KIKNSTFIRHLIIILSSKILNTIFLISRLKW 472
           LK  I+G  RY LR+ PYN         S  IR L +I S  +L+ + LI R  W
Sbjct: 13  LKPNIFGFFRYLLRVSPYN------CSRSNPIRFLFVIFS--LLSFLALIFRAYW 59


>AL021479-1|CAA16321.2|  346|Caenorhabditis elegans Hypothetical
           protein Y22F5A.2 protein.
          Length = 346

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 18/45 (40%), Positives = 25/45 (55%)
 Frame = -1

Query: 336 ETRKSKNILFKNKSLTKNTFTTNHSLICFFF*FPILNLFVILLIG 202
           +TR S N  FK  S+   +    + +  FFF FPIL L V++L G
Sbjct: 230 KTRIS-NRSFKKHSVAVISTIMQNLVFAFFFLFPILILSVVILTG 273


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,911,561
Number of Sequences: 27780
Number of extensions: 398707
Number of successful extensions: 843
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 825
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 843
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2276333906
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)