Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0181.Seq
         (897 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              27   0.23 
DQ325115-1|ABD14129.1|  185|Apis mellifera complementary sex det...    24   2.2  
DQ325121-1|ABD14135.1|  181|Apis mellifera complementary sex det...    22   6.6  
DQ325120-1|ABD14134.1|  181|Apis mellifera complementary sex det...    22   6.6  
DQ325119-1|ABD14133.1|  181|Apis mellifera complementary sex det...    22   6.6  
DQ325118-1|ABD14132.1|  181|Apis mellifera complementary sex det...    22   6.6  
DQ325117-1|ABD14131.1|  181|Apis mellifera complementary sex det...    22   6.6  
DQ325116-1|ABD14130.1|  181|Apis mellifera complementary sex det...    22   6.6  
DQ325114-1|ABD14128.1|  181|Apis mellifera complementary sex det...    22   6.6  
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    22   6.6  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    22   8.7  
AF388659-2|AAK71994.1|  463|Apis mellifera 1D-myo-inositol-trisp...    22   8.7  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    22   8.7  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 27.1 bits (57), Expect = 0.23
 Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 4/50 (8%)
 Frame = -1

Query: 783  SPWKSIVPLVEYVXHWK----NWYPXEIRTPVHRSNTNVPDVLSLRPTTT 646
            +P+    P+  YV  +K    +W     R  V  S  NV  V +LRP TT
Sbjct: 898  APYDGNSPIKRYVIEYKISKGSWETDIDRVLVPGSQQNVAGVFNLRPATT 947



 Score = 25.4 bits (53), Expect = 0.71
 Identities = 9/25 (36%), Positives = 17/25 (68%)
 Frame = -1

Query: 654  TTTLKWTLKKRIYGTRYRLRIKPYN 580
            +T  K+TL+  + G+RY++ +  YN
Sbjct: 1417 STVQKYTLENLLCGSRYQIYVTAYN 1441


>DQ325115-1|ABD14129.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 23.8 bits (49), Expect = 2.2
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = -3

Query: 244 LISNLKFVRNIINWNNFYSTKINTVQF*N 158
           L +N  +  N  N+NN Y+T    +Q+ N
Sbjct: 88  LSNNYNYNNNYNNYNNNYNTNYKKLQYYN 116


>DQ325121-1|ABD14135.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.2 bits (45), Expect = 6.6
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -3

Query: 244 LISNLKFVRNIINWNNFYSTKINTVQF*N 158
           L +N K+  N  N+NN Y+T    +Q+ N
Sbjct: 85  LSNNYKY-SNYNNYNNNYNTNYKKLQYYN 112


>DQ325120-1|ABD14134.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.2 bits (45), Expect = 6.6
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -3

Query: 244 LISNLKFVRNIINWNNFYSTKINTVQF*N 158
           L +N K+  N  N+NN Y+T    +Q+ N
Sbjct: 85  LSNNYKY-SNYNNYNNNYNTNYKKLQYYN 112


>DQ325119-1|ABD14133.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.2 bits (45), Expect = 6.6
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -3

Query: 244 LISNLKFVRNIINWNNFYSTKINTVQF*N 158
           L +N K+  N  N+NN Y+T    +Q+ N
Sbjct: 85  LSNNYKY-SNYNNYNNNYNTNYKKLQYYN 112


>DQ325118-1|ABD14132.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.2 bits (45), Expect = 6.6
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -3

Query: 244 LISNLKFVRNIINWNNFYSTKINTVQF*N 158
           L +N K+  N  N+NN Y+T    +Q+ N
Sbjct: 85  LSNNYKY-SNYNNYNNNYNTNYKKLQYYN 112


>DQ325117-1|ABD14131.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.2 bits (45), Expect = 6.6
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -3

Query: 244 LISNLKFVRNIINWNNFYSTKINTVQF*N 158
           L +N K+  N  N+NN Y+T    +Q+ N
Sbjct: 85  LSNNYKY-SNYNNYNNNYNTNYKKLQYYN 112


>DQ325116-1|ABD14130.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.2 bits (45), Expect = 6.6
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -3

Query: 244 LISNLKFVRNIINWNNFYSTKINTVQF*N 158
           L +N K+  N  N+NN Y+T    +Q+ N
Sbjct: 85  LSNNYKY-SNYNNYNNNYNTNYKKLQYYN 112


>DQ325114-1|ABD14128.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.2 bits (45), Expect = 6.6
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -3

Query: 244 LISNLKFVRNIINWNNFYSTKINTVQF*N 158
           L +N K+  N  N+NN Y+T    +Q+ N
Sbjct: 85  LSNNYKY-SNYNNYNNNYNTNYKKLQYYN 112


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 22.2 bits (45), Expect = 6.6
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +3

Query: 90  NKNESHTFNNDTSYLYYAFI 149
           N N ++ +NN+   LYY  I
Sbjct: 340 NNNYNNNYNNNCKKLYYNII 359


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 21.8 bits (44), Expect = 8.7
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = -3

Query: 238 SNLKFVRNIINWNNFYST 185
           S  + +RNI++W  F+ T
Sbjct: 217 SGWRKLRNIVHWTPFFQT 234


>AF388659-2|AAK71994.1|  463|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform B protein.
          Length = 463

 Score = 21.8 bits (44), Expect = 8.7
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = -3

Query: 238 SNLKFVRNIINWNNFYST 185
           S  + +RNI++W  F+ T
Sbjct: 132 SGWRKLRNIVHWTPFFQT 149


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 21.8 bits (44), Expect = 8.7
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = -3

Query: 238 SNLKFVRNIINWNNFYST 185
           S  + +RNI++W  F+ T
Sbjct: 451 SGWRKLRNIVHWTPFFQT 468


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 236,753
Number of Sequences: 438
Number of extensions: 5612
Number of successful extensions: 20
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29025360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)