Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0181.Seq
         (897 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g04920.1 68417.m00715 expressed protein                             29   3.2  
At4g25870.1 68417.m03720 expressed protein contains Pfam profile...    28   9.7  

>At4g04920.1 68417.m00715 expressed protein 
          Length = 1250

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 13/48 (27%), Positives = 21/48 (43%)
 Frame = -1

Query: 804 IPGCYXPSPWKSIVPLVEYVXHWKNWYPXEIRTPVHRSNTNVPDVLSL 661
           +P     S W    PL  Y+  W+ +   EI+     S+ +  D +SL
Sbjct: 369 VPPSLSSSSWTGFAPLAAYLFSWQEYLISEIKQGKKPSDQDSSDAISL 416


>At4g25870.1 68417.m03720 expressed protein contains Pfam profile
           PF03267: Arabidopsis protein of unknown function, DUF266
          Length = 389

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 14/37 (37%), Positives = 23/37 (62%)
 Frame = +1

Query: 370 IFLKAILFNIL*WTSDFFSSNNLTAMFFLSPNVLPFQ 480
           I  +A++ +IL  T  F ++N+  A  FL+P  LPF+
Sbjct: 78  IAARAVVRDIL-RTPPFITNNSKIAFLFLTPGTLPFE 113


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,127,720
Number of Sequences: 28952
Number of extensions: 334351
Number of successful extensions: 627
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 617
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 627
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2110422216
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)