Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0180.Seq
         (986 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q5DC94 Cluster: SJCHGC09076 protein; n=1; Schistosoma j...    52   2e-05
UniRef50_Q8GEG0 Cluster: Putative uncharacterized protein; n=1; ...    50   9e-05
UniRef50_P00722 Cluster: Beta-galactosidase; n=35; root|Rep: Bet...    49   2e-04
UniRef50_Q37953 Cluster: LacZ protein; n=1; Phage M13mp18|Rep: L...    48   3e-04
UniRef50_UPI0000498F17 Cluster: beta-galactosidase; n=3; Eukaryo...    48   4e-04
UniRef50_Q47336 Cluster: LacZ-alpha peptide; n=2; cellular organ...    44   0.008
UniRef50_Q5MGF5 Cluster: Putative uncharacterized protein; n=2; ...    38   0.40 
UniRef50_Q4Z0C1 Cluster: Putative uncharacterized protein; n=3; ...    37   0.69 
UniRef50_Q669R9 Cluster: Beta-galactosidase; n=14; Yersinia|Rep:...    35   3.7  
UniRef50_Q0BU79 Cluster: Hypothetical cytosolic protein; n=1; Gr...    34   6.5  

>UniRef50_Q5DC94 Cluster: SJCHGC09076 protein; n=1; Schistosoma
           japonicum|Rep: SJCHGC09076 protein - Schistosoma
           japonicum (Blood fluke)
          Length = 109

 Score = 52.0 bits (119), Expect = 2e-05
 Identities = 29/59 (49%), Positives = 33/59 (55%)
 Frame = +1

Query: 454 GGARYPIRPIVSRITIHWASFYKRRDWXNPGVTQLNRLQHIPFSPAGVITKXAEPIRPS 630
           GGAR PI P      I  A+F KRR+  NPG  QLN L+ +P  P G  TK A P R S
Sbjct: 39  GGARDPISPKGGPNKISGAAFLKRREGKNPGCPQLNPLEALPLFPGGEKTKKAPPNRLS 97


>UniRef50_Q8GEG0 Cluster: Putative uncharacterized protein; n=1;
           Erwinia amylovora|Rep: Putative uncharacterized protein
           - Erwinia amylovora (Fire blight bacteria)
          Length = 123

 Score = 50.0 bits (114), Expect = 9e-05
 Identities = 30/67 (44%), Positives = 38/67 (56%), Gaps = 1/67 (1%)
 Frame = +1

Query: 466 YPIRPIVSRITIHWASFYKRRDWXNPGVTQLNRL-QHIPFSPAGVITKXAEPIRPSXQLR 642
           YP+   +S      A   +RRDW NPGVTQLNRL  H PF+ +   ++ A   RPS QLR
Sbjct: 55  YPLVKALSESYYGLAVVLQRRDWENPGVTQLNRLAAHPPFA-SWRNSEEARTDRPSQQLR 113

Query: 643 XXXANWQ 663
                W+
Sbjct: 114 XLNGEWR 120


>UniRef50_P00722 Cluster: Beta-galactosidase; n=35; root|Rep:
           Beta-galactosidase - Escherichia coli (strain K12)
          Length = 1024

 Score = 48.8 bits (111), Expect = 2e-04
 Identities = 28/61 (45%), Positives = 36/61 (59%), Gaps = 1/61 (1%)
 Frame = +1

Query: 484 VSRITIHWASFYKRRDWXNPGVTQLNRL-QHIPFSPAGVITKXAEPIRPSXQLRXXXANW 660
           ++ IT   A   +RRDW NPGVTQLNRL  H PF+ +   ++ A   RPS QLR     W
Sbjct: 1   MTMITDSLAVVLQRRDWENPGVTQLNRLAAHPPFA-SWRNSEEARTDRPSQQLRSLNGEW 59

Query: 661 Q 663
           +
Sbjct: 60  R 60


>UniRef50_Q37953 Cluster: LacZ protein; n=1; Phage M13mp18|Rep: LacZ
           protein - Phage M13mp18
          Length = 102

 Score = 48.4 bits (110), Expect = 3e-04
 Identities = 27/66 (40%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
 Frame = +1

Query: 469 PIRPIVSRITIHWASFYKRRDWXNPGVTQLNRL-QHIPFSPAGVITKXAEPIRPSXQLRX 645
           P+       ++  A   +RRDW NPGVTQLNRL  H PF+ +   ++ A   RPS QLR 
Sbjct: 14  PLESTCRHASLALAVVLQRRDWENPGVTQLNRLAAHPPFA-SWRNSEEARTDRPSQQLRS 72

Query: 646 XXANWQ 663
               W+
Sbjct: 73  LNGEWR 78


>UniRef50_UPI0000498F17 Cluster: beta-galactosidase; n=3;
           Eukaryota|Rep: beta-galactosidase - Entamoeba
           histolytica HM-1:IMSS
          Length = 86

 Score = 48.0 bits (109), Expect = 4e-04
 Identities = 24/47 (51%), Positives = 27/47 (57%)
 Frame = +1

Query: 502 HWASFYKRRDWXNPGVTQLNRLQHIPFSPAGVITKXAEPIRPSXQLR 642
           HW SFY         +  L  LQHIP SPAGVI++ A   RPS QLR
Sbjct: 5   HWPSFYNVVTGKTLALPNLIALQHIPLSPAGVISEEARTDRPSQQLR 51


>UniRef50_Q47336 Cluster: LacZ-alpha peptide; n=2; cellular
           organisms|Rep: LacZ-alpha peptide - Escherichia coli
          Length = 90

 Score = 43.6 bits (98), Expect = 0.008
 Identities = 24/42 (57%), Positives = 29/42 (69%), Gaps = 1/42 (2%)
 Frame = +1

Query: 520 KRRDWXNPGVTQLNRL-QHIPFSPAGVITKXAEPIRPSXQLR 642
           +RRDW NPGVTQLNRL  H PF+ +   ++ A   RPS QLR
Sbjct: 27  QRRDWENPGVTQLNRLAAHPPFA-SWRNSEEARTDRPSQQLR 67


>UniRef50_Q5MGF5 Cluster: Putative uncharacterized protein; n=2;
           Bombycoidea|Rep: Putative uncharacterized protein -
           Lonomia obliqua (Moth)
          Length = 74

 Score = 37.9 bits (84), Expect = 0.40
 Identities = 18/38 (47%), Positives = 20/38 (52%)
 Frame = +1

Query: 142 IYGTGGLLTPLVAPVLXXXXXXXXXXXXXXXXXXYYGN 255
           IYGTGGLLTP+VAP+L                  YYGN
Sbjct: 17  IYGTGGLLTPIVAPMLGFGSAGIAAGSTAAAAQAYYGN 54



 Score = 36.7 bits (81), Expect = 0.92
 Identities = 15/20 (75%), Positives = 20/20 (100%)
 Frame = +3

Query: 255 LVAGSIVSQLTAAAMVAPTP 314
           +VAGS++SQLT+AAM+APTP
Sbjct: 55  VVAGSVISQLTSAAMLAPTP 74


>UniRef50_Q4Z0C1 Cluster: Putative uncharacterized protein; n=3;
           Plasmodium (Vinckeia)|Rep: Putative uncharacterized
           protein - Plasmodium berghei
          Length = 275

 Score = 37.1 bits (82), Expect = 0.69
 Identities = 16/16 (100%), Positives = 16/16 (100%)
 Frame = +1

Query: 451 RGGARYPIRPIVSRIT 498
           RGGARYPIRPIVSRIT
Sbjct: 260 RGGARYPIRPIVSRIT 275


>UniRef50_Q669R9 Cluster: Beta-galactosidase; n=14; Yersinia|Rep:
           Beta-galactosidase - Yersinia pseudotuberculosis
          Length = 1066

 Score = 34.7 bits (76), Expect = 3.7
 Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
 Frame = +1

Query: 523 RRDWXNPGVTQLNRLQ-HIPFSPAGVITKXAEPIRPSXQLRXXXANW 660
           RRDW NP +TQ +RL+ H PF     + + A+  RPS Q +     W
Sbjct: 21  RRDWENPQITQYHRLEAHPPFHSWRDV-ESAQKDRPSPQQQTLNGLW 66


>UniRef50_Q0BU79 Cluster: Hypothetical cytosolic protein; n=1;
           Granulibacter bethesdensis CGDNIH1|Rep: Hypothetical
           cytosolic protein - Granulobacter bethesdensis (strain
           ATCC BAA-1260 / CGDNIH1)
          Length = 90

 Score = 33.9 bits (74), Expect = 6.5
 Identities = 17/40 (42%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
 Frame = +3

Query: 78  QKLKEHGA--SSCISGKRGRRCCNIWHWGSVDSISGSRAR 191
           Q L+EHG    S ++G+R  RC N WH G  D +   R R
Sbjct: 42  QALREHGTFQGSMLAGRRILRC-NPWHQGGYDPVPAGRCR 80


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 899,066,261
Number of Sequences: 1657284
Number of extensions: 16861521
Number of successful extensions: 30507
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 29493
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30490
length of database: 575,637,011
effective HSP length: 101
effective length of database: 408,251,327
effective search space used: 92673051229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)