Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0180.Seq
         (986 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g15840.1 68417.m02409 expressed protein                             30   2.1  
At5g07790.1 68418.m00892 expressed protein                             29   3.6  
At4g11900.1 68417.m01893 S-locus lectin protein kinase family pr...    29   4.8  

>At4g15840.1 68417.m02409 expressed protein
          Length = 660

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 16/36 (44%), Positives = 21/36 (58%)
 Frame = +3

Query: 171 ISGSRARFQLSGNSGRKHSRCCTSILRKLVAGSIVS 278
           +SGS   FQ S NS     R CTS++ K   GS+V+
Sbjct: 115 VSGSNLVFQQSSNSQTNFGRPCTSVVDK-TEGSVVA 149


>At5g07790.1 68418.m00892 expressed protein
          Length = 616

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 18/63 (28%), Positives = 31/63 (49%)
 Frame = +3

Query: 102 SSCISGKRGRRCCNIWHWGSVDSISGSRARFQLSGNSGRKHSRCCTSILRKLVAGSIVSQ 281
           S  +  KR RR   +   G+   +S + A   +S  SGR+ + C TS+ + L+  + +S 
Sbjct: 411 SGRVKRKRSRRISLVAE-GNYQQVSAAEAIVDISRKSGRETAACITSLSKNLLWFADISS 469

Query: 282 LTA 290
             A
Sbjct: 470 SVA 472


>At4g11900.1 68417.m01893 S-locus lectin protein kinase family
           protein contains Pfam domains, PF00954: S-locus
           glycoprotein family, PF00069: Protein kinase domain, and
           PF01453: Lectin (probable mannose binding)
          Length = 849

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 12/38 (31%), Positives = 16/38 (42%)
 Frame = -3

Query: 882 FFPPXDVWXPXVLXKRGXSXFQNWXQKLTPIPGXILLD 769
           F  P D W P    + G   F +W   + P PG   L+
Sbjct: 182 FDHPSDTWLPGGKIRLGSQLFTSWESLIDPSPGRYSLE 219


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,305,494
Number of Sequences: 28952
Number of extensions: 369799
Number of successful extensions: 695
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 678
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 695
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2402185656
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)