Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0177.Seq
         (676 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC8D2.07c |sfc9||transcription factor TFIIIC complex subunit S...    27   3.3  
SPBC83.11 |||triose phosphate transporter|Schizosaccharomyces po...    26   4.3  
SPCC61.03 |||conserved protein|Schizosaccharomyces pombe|chr 3||...    25   7.6  
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    25   10.0 
SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|ch...    25   10.0 
SPAC2E1P5.05 |||U3 snoRNP-associated protein Rrp9 |Schizosacchar...    25   10.0 

>SPBC8D2.07c |sfc9||transcription factor TFIIIC complex subunit Sfc9
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 673

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = -3

Query: 512 DVTCXYLSPSVFSMVRFCXCRPXFCDQKTAEQRTPNTXA 396
           DV   +L  S++S    C  +  FCD +  +   P+T A
Sbjct: 4   DVALDFLPSSLYSCTCSCDGKLAFCDSEKVQILVPSTEA 42


>SPBC83.11 |||triose phosphate transporter|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 434

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 17/66 (25%), Positives = 27/66 (40%)
 Frame = -3

Query: 506 TCXYLSPSVFSMVRFCXCRPXFCDQKTAEQRTPNTXAAXGLAXXVHIPRWXTWHIFAARV 327
           TC ++S ++F    F   +      K    +      + G+A  V IP W     FA   
Sbjct: 159 TCIFVSQNIFGSKIFMEAKSHSTHTKKHYNKLNLLLYSSGVAFIVMIPVWLYQEGFAYLP 218

Query: 326 DVVTPV 309
           +V +PV
Sbjct: 219 EVGSPV 224


>SPCC61.03 |||conserved protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 327

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 14/43 (32%), Positives = 17/43 (39%)
 Frame = +3

Query: 75  CCRPGGHSRCNAYHDSGGGRCGNYQAYQQAPVYCRDAW*VSGN 203
           C  PGG  RC    D   G    + A++ A  Y    W   GN
Sbjct: 224 CSVPGGLKRCGGQGDILTGILATFLAWRHA--YLSKEWDTEGN 264


>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3699

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 14/48 (29%), Positives = 25/48 (52%)
 Frame = -2

Query: 303  GSCHHQGKAQSSHQSVFTCTVQSNSTRSGRDIYRSLILTRHHGNILAL 160
            G C+ +   +S+  ++    +Q  S R+ R   R + LTR+  + LAL
Sbjct: 3343 GVCYRRLSIRSNGGTIHPFVIQYPSARNSRREERFMQLTRYLNDALAL 3390


>SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1822

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 14/53 (26%), Positives = 24/53 (45%)
 Frame = -1

Query: 553  NLXLSPXSTQCHRRMLPAXTYRPACFRWSDFAXAGXCFVTRRPQSREHRILSL 395
            N+ LS   T C +++L    YR   F   D+      F+    ++  H++L L
Sbjct: 1521 NITLSRIGTNCMQQLLSGNAYR---FEVKDWNLVADMFIELFKETTPHQLLLL 1570


>SPAC2E1P5.05 |||U3 snoRNP-associated protein Rrp9
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 524

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 11/28 (39%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
 Frame = +1

Query: 13  LTPG--AAAWNPSPITLPAQPDFVVGPA 90
           L PG  +A  +P P+T+P QP ++   A
Sbjct: 391 LAPGRHSAETSPDPVTIPPQPRWITSLA 418


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,531,751
Number of Sequences: 5004
Number of extensions: 47222
Number of successful extensions: 80
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 80
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)