Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0177.Seq
         (676 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_06_0158 - 11320173-11320279,11320347-11321038,11321283-113215...    33   0.16 
04_04_1324 + 32659752-32661972,32662067-32662761                       31   0.64 
01_03_0022 + 11724319-11725381,11725476-11725582                       31   0.64 
10_07_0149 - 13417794-13417956,13418079-13418252,13418423-134186...    31   0.84 
04_03_1025 + 21803807-21805249                                         30   1.9  
09_06_0357 + 22502660-22502876,22503433-22504577                       29   4.5  
09_02_0116 + 4420808-4421323,4421367-4421918                           28   5.9  
01_02_0042 - 10513799-10514152,10514252-10514545,10514630-105148...    28   7.8  

>10_06_0158 -
           11320173-11320279,11320347-11321038,11321283-11321509,
           11321521-11321611,11321839-11322125,11322428-11322523
          Length = 499

 Score = 33.5 bits (73), Expect = 0.16
 Identities = 26/95 (27%), Positives = 40/95 (42%)
 Frame = -2

Query: 294 HHQGKAQSSHQSVFTCTVQSNSTRSGRDIYRSLILTRHHGNILALVGTLDNCRIYRXLNR 115
           H +G  +  H +  T  VQ  +   G    RS    R +  +LA  GT+D C       R
Sbjct: 41  HGRGTREVLHAATTTRGVQRRTWTQGGARRRSTEFDRWNQTLLAAAGTVDGCFNREMTRR 100

Query: 114 GMRYTLSARRADNKVRLRRQGNRGRIPRCSTWCQG 10
           G +  +    +D ++  R  G+ GR+ R   W  G
Sbjct: 101 GAQ--VDGGGSDWRIN-RWVGHFGRVARTFQWSIG 132


>04_04_1324 + 32659752-32661972,32662067-32662761
          Length = 971

 Score = 31.5 bits (68), Expect = 0.64
 Identities = 23/66 (34%), Positives = 33/66 (50%)
 Frame = +1

Query: 64  QPDFVVGPAGTQGVTHTTIQXAVDAAIIKRTNKRQYIAVMPGEYQGTVYVPAAPGGITLY 243
           +PD VV   G+      TI  AV+A + K +  R  I V  GEY   V +P++   I +Y
Sbjct: 657 KPDKVVAKDGSGDFK--TITEAVNA-VPKNSPTRFVIYVKAGEYNEYVTIPSSLPNIFMY 713

Query: 244 GTGENR 261
           G G  +
Sbjct: 714 GDGPTK 719


>01_03_0022 + 11724319-11725381,11725476-11725582
          Length = 389

 Score = 31.5 bits (68), Expect = 0.64
 Identities = 22/62 (35%), Positives = 29/62 (46%)
 Frame = +1

Query: 67  PDFVVGPAGTQGVTHTTIQXAVDAAIIKRTNKRQYIAVMPGEYQGTVYVPAAPGGITLYG 246
           PD VV   G+ G  +TT+  AV AA    +NKR  I +  G Y   V V  +   +   G
Sbjct: 272 PDAVVAKDGSGG--YTTVSAAV-AAAPANSNKRYVIHIKAGAYMENVEVGKSKKNLMFIG 328

Query: 247 TG 252
            G
Sbjct: 329 DG 330


>10_07_0149 -
           13417794-13417956,13418079-13418252,13418423-13418610,
           13418698-13418775,13418889-13418993,13419613-13419915
          Length = 336

 Score = 31.1 bits (67), Expect = 0.84
 Identities = 20/53 (37%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
 Frame = +1

Query: 91  GTQG-VTHTTIQXAVDAAIIKRTNKRQYIAVMPGEYQGTVYVPAAPGGITLYG 246
           G +G     T+Q AVDA  +     R  I + PG Y+  VYV  A   +TL G
Sbjct: 27  GEEGEAVFATVQAAVDAVPVGN-RVRTVIRLAPGTYREPVYVAKAKNLVTLSG 78


>04_03_1025 + 21803807-21805249
          Length = 480

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 20/55 (36%), Positives = 26/55 (47%)
 Frame = +1

Query: 88  AGTQGVTHTTIQXAVDAAIIKRTNKRQYIAVMPGEYQGTVYVPAAPGGITLYGTG 252
           A TQ   ++T+Q A+DAA    T     I V  G Y+  V +P     I L G G
Sbjct: 176 ATTQRSDYSTVQAAIDAA-PNHTAGHFVIKVAAGIYKENVVIPYEKTNILLVGDG 229


>09_06_0357 + 22502660-22502876,22503433-22504577
          Length = 453

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 20/47 (42%), Positives = 25/47 (53%)
 Frame = +1

Query: 112 TTIQXAVDAAIIKRTNKRQYIAVMPGEYQGTVYVPAAPGGITLYGTG 252
           TTIQ AVDA +      R  IAV  G Y+  V V +    +TL+G G
Sbjct: 148 TTIQKAVDA-VPDYAATRTLIAVDAGIYREKVVVWSNKTALTLHGRG 193


>09_02_0116 + 4420808-4421323,4421367-4421918
          Length = 355

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
 Frame = -3

Query: 299 HATIKGKPNL--HINRFSPVPYRVIPPGAAGTYTVP*YSPGITA 174
           H+     P L  H +  +PVP R  PP      TVP + P ITA
Sbjct: 23  HSAAPAPPPLLGHFHHPAPVPPRGCPPRPHTLLTVPAFQPLITA 66


>01_02_0042 - 10513799-10514152,10514252-10514545,10514630-10514893,
            10515019-10515285,10515363-10516207,10516311-10516584,
            10516694-10517219,10518009-10518247,10518370-10518591,
            10518689-10518864,10518962-10519358
          Length = 1285

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = -2

Query: 228  TRSGRDIYRSLILTRHHGNILALVG 154
            TR   +I+R L LT H G  +ALVG
Sbjct: 1052 TRPDVEIFRDLCLTIHSGKTVALVG 1076


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,034,375
Number of Sequences: 37544
Number of extensions: 407731
Number of successful extensions: 979
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 954
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 979
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1714968940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)