Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0177.Seq
         (676 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_6096| Best HMM Match : Chitin_bind_3 (HMM E-Value=1.9e-06)          29   4.5  
SB_4252| Best HMM Match : zf-CCHC (HMM E-Value=0.00032)                28   6.0  
SB_22798| Best HMM Match : Cadherin (HMM E-Value=0)                    28   7.9  
SB_18611| Best HMM Match : IBN_N (HMM E-Value=7.4e-06)                 28   7.9  

>SB_6096| Best HMM Match : Chitin_bind_3 (HMM E-Value=1.9e-06)
          Length = 295

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +3

Query: 129 GRCGNYQAYQQAPVYCRDAW*VSGNGICPCRS 224
           G+CGN    Q+  V C D   + GNG+ P ++
Sbjct: 187 GKCGNGLGPQETFVNCADVKILPGNGVVPTQA 218


>SB_4252| Best HMM Match : zf-CCHC (HMM E-Value=0.00032)
          Length = 129

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 17/50 (34%), Positives = 24/50 (48%)
 Frame = -2

Query: 177 GNILALVGTLDNCRIYRXLNRGMRYTLSARRADNKVRLRRQGNRGRIPRC 28
           G ++   G++ N R+ R   R +R       AD +VRLR  GN     RC
Sbjct: 12  GRLIEHYGSVRNTRLERAKFRALRRDEKESVADFEVRLRNAGNAVVCFRC 61


>SB_22798| Best HMM Match : Cadherin (HMM E-Value=0)
          Length = 3255

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +3

Query: 90   GHSRCNAYHDSGGGRCGNYQAYQQA 164
            G   C A +D+GGG  G +   QQA
Sbjct: 2181 GKEHCGATNDTGGGEGGRFLGVQQA 2205


>SB_18611| Best HMM Match : IBN_N (HMM E-Value=7.4e-06)
          Length = 421

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = -2

Query: 300 SCHHQGKAQSSHQSVFTCTVQSNSTRSGRDIYRSLILTRHH 178
           SCHHQ    SSH  + +C  Q  S+ S      ++I + HH
Sbjct: 246 SCHHQVMPSSSHTIIKSCHHQVMSSSS-----HAIIKSHHH 281


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,958,363
Number of Sequences: 59808
Number of extensions: 432755
Number of successful extensions: 983
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 875
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 981
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1733301648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)