Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0177.Seq
         (676 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00046-1|AAC47044.3| 2560|Caenorhabditis elegans Temporarily ass...    29   3.0  
AB206836-1|BAD91087.1| 2502|Caenorhabditis elegans Ten-1S protein.     29   3.0  
AB206835-1|BAD91086.1| 2684|Caenorhabditis elegans Ten-1L protein.     29   3.0  
Z81122-3|CAB54313.1| 1076|Caenorhabditis elegans Hypothetical pr...    28   5.3  
Z81122-2|CAB03354.1| 1074|Caenorhabditis elegans Hypothetical pr...    28   5.3  
AF100659-8|AAC68966.1|  688|Caenorhabditis elegans Hypothetical ...    28   7.0  
AC092690-3|AAK73857.1| 1145|Caenorhabditis elegans Hypothetical ...    28   7.0  
AC084158-7|AAK68560.1|  929|Caenorhabditis elegans Hypothetical ...    28   7.0  
Z75953-4|CAJ85747.1|  294|Caenorhabditis elegans Hypothetical pr...    27   9.2  
Z75953-3|CAB00100.1|  611|Caenorhabditis elegans Hypothetical pr...    27   9.2  
U97008-7|AAB52313.1|  385|Caenorhabditis elegans Temporarily ass...    27   9.2  
AF166171-1|AAD49860.1|  611|Caenorhabditis elegans adducin-head-...    27   9.2  

>U00046-1|AAC47044.3| 2560|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 152, isoform a protein.
          Length = 2560

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 20/73 (27%), Positives = 28/73 (38%), Gaps = 4/73 (5%)
 Frame = +3

Query: 27  CSVESFPDYPACAT*LC-CRPGG---HSRCNAYHDSGGGRCGNYQAYQQAPVYCRDAW*V 194
           C  ES  D   C+   C C  G       C  +    G  C +    ++  + C D    
Sbjct: 519 CQCESGWDSVDCSQQACQCVNGDCLDDGSCQCWKGWRGSNCTD----KKCAIGCEDRGKC 574

Query: 195 SGNGICPCRSGWN 233
           + +G C C SGWN
Sbjct: 575 ASDGSCKCSSGWN 587


>AB206836-1|BAD91087.1| 2502|Caenorhabditis elegans Ten-1S protein.
          Length = 2502

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 20/73 (27%), Positives = 28/73 (38%), Gaps = 4/73 (5%)
 Frame = +3

Query: 27  CSVESFPDYPACAT*LC-CRPGG---HSRCNAYHDSGGGRCGNYQAYQQAPVYCRDAW*V 194
           C  ES  D   C+   C C  G       C  +    G  C +    ++  + C D    
Sbjct: 461 CQCESGWDSVDCSQQACQCVNGDCLDDGSCQCWKGWRGSNCTD----KKCAIGCEDRGKC 516

Query: 195 SGNGICPCRSGWN 233
           + +G C C SGWN
Sbjct: 517 ASDGSCKCSSGWN 529


>AB206835-1|BAD91086.1| 2684|Caenorhabditis elegans Ten-1L protein.
          Length = 2684

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 20/73 (27%), Positives = 28/73 (38%), Gaps = 4/73 (5%)
 Frame = +3

Query: 27  CSVESFPDYPACAT*LC-CRPGG---HSRCNAYHDSGGGRCGNYQAYQQAPVYCRDAW*V 194
           C  ES  D   C+   C C  G       C  +    G  C +    ++  + C D    
Sbjct: 643 CQCESGWDSVDCSQQACQCVNGDCLDDGSCQCWKGWRGSNCTD----KKCAIGCEDRGKC 698

Query: 195 SGNGICPCRSGWN 233
           + +G C C SGWN
Sbjct: 699 ASDGSCKCSSGWN 711


>Z81122-3|CAB54313.1| 1076|Caenorhabditis elegans Hypothetical
           protein T13F2.3b protein.
          Length = 1076

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = -3

Query: 245 PYRVIPPGAAGTYTVP*YSPG 183
           P+R  PPG +GT + P ++PG
Sbjct: 389 PHRFAPPGPSGTTSSPHFAPG 409


>Z81122-2|CAB03354.1| 1074|Caenorhabditis elegans Hypothetical
           protein T13F2.3a protein.
          Length = 1074

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = -3

Query: 245 PYRVIPPGAAGTYTVP*YSPG 183
           P+R  PPG +GT + P ++PG
Sbjct: 387 PHRFAPPGPSGTTSSPHFAPG 407


>AF100659-8|AAC68966.1|  688|Caenorhabditis elegans Hypothetical
           protein F58E2.3 protein.
          Length = 688

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 21/77 (27%), Positives = 38/77 (49%)
 Frame = -2

Query: 300 SCHHQGKAQSSHQSVFTCTVQSNSTRSGRDIYRSLILTRHHGNILALVGTLDNCRIYRXL 121
           +C      QSS +    CT    S  S + ++  L++     NIL+ +G LD CR+ R  
Sbjct: 295 ACEELRNVQSSKE--LECTSLCTSELSIKVLHNGLLMK----NILSHLGRLDICRL-RRT 347

Query: 120 NRGMRYTLSARRADNKV 70
           +RG++  +   + D ++
Sbjct: 348 SRGVQKCVDIIKPDAEI 364


>AC092690-3|AAK73857.1| 1145|Caenorhabditis elegans Hypothetical
           protein BE0003N10.3 protein.
          Length = 1145

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 13/42 (30%), Positives = 19/42 (45%)
 Frame = -2

Query: 291 HQGKAQSSHQSVFTCTVQSNSTRSGRDIYRSLILTRHHGNIL 166
           H+G  + +H    T  VQ        DI  S++LT  H  +L
Sbjct: 520 HEGTHEVTHTIRITSDVQILGASGSEDIATSVVLTGRHATVL 561


>AC084158-7|AAK68560.1|  929|Caenorhabditis elegans Hypothetical
           protein Y69A2AR.16 protein.
          Length = 929

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 14/46 (30%), Positives = 22/46 (47%)
 Frame = -1

Query: 523 CHRRMLPAXTYRPACFRWSDFAXAGXCFVTRRPQSREHRILSLRXV 386
           C RR L A +    C +W+D+       +   PQS+E   + +R V
Sbjct: 440 CLRRFLNAASSSVDCDKWNDYQGVSSENLPVMPQSKEFSAILVRFV 485


>Z75953-4|CAJ85747.1|  294|Caenorhabditis elegans Hypothetical
           protein F57F5.4b protein.
          Length = 294

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -1

Query: 313 QSAGXMPPSRESPIFTSIGFHLYR 242
           Q  G +P S+ES I   +G+H YR
Sbjct: 146 QKCGLLPISQESMIVGDVGYHEYR 169


>Z75953-3|CAB00100.1|  611|Caenorhabditis elegans Hypothetical
           protein F57F5.4a protein.
          Length = 611

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -1

Query: 313 QSAGXMPPSRESPIFTSIGFHLYR 242
           Q  G +P S+ES I   +G+H YR
Sbjct: 463 QKCGLLPISQESMIVGDVGYHEYR 486


>U97008-7|AAB52313.1|  385|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 293 protein.
          Length = 385

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 15/30 (50%), Positives = 17/30 (56%)
 Frame = +3

Query: 123 GGGRCGNYQAYQQAPVYCRDAW*VSGNGIC 212
           GGG C NYQA   +   C  AW  +GNG C
Sbjct: 340 GGGSCTNYQA--DSSTACA-AW--AGNGFC 364


>AF166171-1|AAD49860.1|  611|Caenorhabditis elegans
           adducin-head-domain-related protein protein.
          Length = 611

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -1

Query: 313 QSAGXMPPSRESPIFTSIGFHLYR 242
           Q  G +P S+ES I   +G+H YR
Sbjct: 463 QKCGLLPISQESMIVGDVGYHEYR 486


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,873,724
Number of Sequences: 27780
Number of extensions: 306249
Number of successful extensions: 720
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 664
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 720
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1529108810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)