Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0177.Seq
         (676 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325067-1|ABD14081.1|  152|Apis mellifera complementary sex det...    22   6.1  
DQ325066-1|ABD14080.1|  152|Apis mellifera complementary sex det...    22   6.1  
DQ325065-1|ABD14079.1|  152|Apis mellifera complementary sex det...    22   6.1  
DQ325064-1|ABD14078.1|  152|Apis mellifera complementary sex det...    22   6.1  
DQ325063-1|ABD14077.1|  152|Apis mellifera complementary sex det...    22   6.1  
DQ325062-1|ABD14076.1|  152|Apis mellifera complementary sex det...    22   6.1  
DQ325061-1|ABD14075.1|  152|Apis mellifera complementary sex det...    22   6.1  
AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.          22   6.1  
AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.          22   6.1  
AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.          22   6.1  
AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.          22   6.1  
AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.          22   6.1  
AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.          22   6.1  
AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.          22   6.1  
AY352276-1|AAQ67417.1|  385|Apis mellifera complementary sex det...    22   6.1  
AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex det...    22   6.1  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     21   8.1  

>DQ325067-1|ABD14081.1|  152|Apis mellifera complementary sex
           determiner protein.
          Length = 152

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 13/39 (33%), Positives = 17/39 (43%)
 Frame = -3

Query: 341 FAARVDVVTPVXRXHATIKGKPNLHINRFSPVPYRVIPP 225
           F  R  +V P       + G  + HI   +P P R IPP
Sbjct: 99  FPPRPIMVRPWVPMRGQVPG--SRHIGPLTPFPPRFIPP 135


>DQ325066-1|ABD14080.1|  152|Apis mellifera complementary sex
           determiner protein.
          Length = 152

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 13/39 (33%), Positives = 17/39 (43%)
 Frame = -3

Query: 341 FAARVDVVTPVXRXHATIKGKPNLHINRFSPVPYRVIPP 225
           F  R  +V P       + G  + HI   +P P R IPP
Sbjct: 99  FPPRPIMVRPWVPMRGQVPG--SRHIGPLTPFPPRFIPP 135


>DQ325065-1|ABD14079.1|  152|Apis mellifera complementary sex
           determiner protein.
          Length = 152

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 13/39 (33%), Positives = 17/39 (43%)
 Frame = -3

Query: 341 FAARVDVVTPVXRXHATIKGKPNLHINRFSPVPYRVIPP 225
           F  R  +V P       + G  + HI   +P P R IPP
Sbjct: 99  FPPRPIMVRPWVPMRGQVPG--SRHIGPLTPFPPRFIPP 135


>DQ325064-1|ABD14078.1|  152|Apis mellifera complementary sex
           determiner protein.
          Length = 152

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 13/39 (33%), Positives = 17/39 (43%)
 Frame = -3

Query: 341 FAARVDVVTPVXRXHATIKGKPNLHINRFSPVPYRVIPP 225
           F  R  +V P       + G  + HI   +P P R IPP
Sbjct: 99  FPPRPIMVRPWVPMRGQVPG--SRHIGPLTPFPPRFIPP 135


>DQ325063-1|ABD14077.1|  152|Apis mellifera complementary sex
           determiner protein.
          Length = 152

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 13/39 (33%), Positives = 17/39 (43%)
 Frame = -3

Query: 341 FAARVDVVTPVXRXHATIKGKPNLHINRFSPVPYRVIPP 225
           F  R  +V P       + G  + HI   +P P R IPP
Sbjct: 99  FPPRPIMVRPWVPMRGQVPG--SRHIGPLTPFPPRFIPP 135


>DQ325062-1|ABD14076.1|  152|Apis mellifera complementary sex
           determiner protein.
          Length = 152

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 13/39 (33%), Positives = 17/39 (43%)
 Frame = -3

Query: 341 FAARVDVVTPVXRXHATIKGKPNLHINRFSPVPYRVIPP 225
           F  R  +V P       + G  + HI   +P P R IPP
Sbjct: 99  FPPRPIMVRPWVPMRGQVPG--SRHIGPLTPFPPRFIPP 135


>DQ325061-1|ABD14075.1|  152|Apis mellifera complementary sex
           determiner protein.
          Length = 152

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 13/39 (33%), Positives = 17/39 (43%)
 Frame = -3

Query: 341 FAARVDVVTPVXRXHATIKGKPNLHINRFSPVPYRVIPP 225
           F  R  +V P       + G  + HI   +P P R IPP
Sbjct: 99  FPPRPIMVRPWVPMRGQVPG--SRHIGPLTPFPPRFIPP 135


>AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 13/39 (33%), Positives = 17/39 (43%)
 Frame = -3

Query: 341 FAARVDVVTPVXRXHATIKGKPNLHINRFSPVPYRVIPP 225
           F  R  +V P       + G  + HI   +P P R IPP
Sbjct: 348 FPPRPIMVRPWVPMRGQVPG--SRHIGPLTPFPPRFIPP 384


>AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 13/39 (33%), Positives = 17/39 (43%)
 Frame = -3

Query: 341 FAARVDVVTPVXRXHATIKGKPNLHINRFSPVPYRVIPP 225
           F  R  +V P       + G  + HI   +P P R IPP
Sbjct: 348 FPPRPIMVRPWVPMRGQVPG--SRHIGPLTPFPPRFIPP 384


>AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 13/39 (33%), Positives = 17/39 (43%)
 Frame = -3

Query: 341 FAARVDVVTPVXRXHATIKGKPNLHINRFSPVPYRVIPP 225
           F  R  +V P       + G  + HI   +P P R IPP
Sbjct: 348 FPPRPIMVRPWVPMRGQVPG--SRHIGPLTPFPPRFIPP 384


>AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 13/39 (33%), Positives = 17/39 (43%)
 Frame = -3

Query: 341 FAARVDVVTPVXRXHATIKGKPNLHINRFSPVPYRVIPP 225
           F  R  +V P       + G  + HI   +P P R IPP
Sbjct: 348 FPPRPIMVRPWVPMRGQVPG--SRHIGPLTPFPPRFIPP 384


>AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 13/39 (33%), Positives = 17/39 (43%)
 Frame = -3

Query: 341 FAARVDVVTPVXRXHATIKGKPNLHINRFSPVPYRVIPP 225
           F  R  +V P       + G  + HI   +P P R IPP
Sbjct: 348 FPPRPIMVRPWVPMRGQVPG--SRHIGPLTPFPPRFIPP 384


>AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 13/39 (33%), Positives = 17/39 (43%)
 Frame = -3

Query: 341 FAARVDVVTPVXRXHATIKGKPNLHINRFSPVPYRVIPP 225
           F  R  +V P       + G  + HI   +P P R IPP
Sbjct: 348 FPPRPIMVRPWVPMRGQVPG--SRHIGPLTPFPPRFIPP 384


>AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.
          Length = 400

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 13/39 (33%), Positives = 17/39 (43%)
 Frame = -3

Query: 341 FAARVDVVTPVXRXHATIKGKPNLHINRFSPVPYRVIPP 225
           F  R  +V P       + G  + HI   +P P R IPP
Sbjct: 347 FPPRPIMVRPWVPMRGQVPG--SRHIGPLTPFPPRFIPP 383


>AY352276-1|AAQ67417.1|  385|Apis mellifera complementary sex
           determiner protein.
          Length = 385

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 13/39 (33%), Positives = 17/39 (43%)
 Frame = -3

Query: 341 FAARVDVVTPVXRXHATIKGKPNLHINRFSPVPYRVIPP 225
           F  R  +V P       + G  + HI   +P P R IPP
Sbjct: 332 FPPRPIMVRPWVPMRGQVPG--SRHIGPLTPFPPRFIPP 368


>AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex
           determiner protein.
          Length = 401

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 13/39 (33%), Positives = 17/39 (43%)
 Frame = -3

Query: 341 FAARVDVVTPVXRXHATIKGKPNLHINRFSPVPYRVIPP 225
           F  R  +V P       + G  + HI   +P P R IPP
Sbjct: 348 FPPRPIMVRPWVPMRGQVPG--SRHIGPLTPFPPRFIPP 384


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 13/51 (25%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
 Frame = -3

Query: 341 FAARVDVVTPVXRXHATIKG-KPNLHINRFSPVPYRVIPPGAAGTYTVP*Y 192
           F +   + T   +  +TI+  +P +  +R SP+ YR+  P    +   P Y
Sbjct: 392 FPSLYPMATTSPQSQSTIQTLRPQVSPDRTSPMEYRLYNPALIQSQPSPQY 442


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 184,334
Number of Sequences: 438
Number of extensions: 3926
Number of successful extensions: 17
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20464920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)