Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0176.Seq
         (901 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_06_0240 - 26629218-26629323,26629412-26629490,26629656-266297...    29   3.8  
02_02_0054 - 6398829-6399047,6399470-6399676,6399858-6400557,640...    29   3.8  
02_02_0419 - 10009686-10012568                                         29   6.7  

>05_06_0240 -
           26629218-26629323,26629412-26629490,26629656-26629761,
           26629844-26629947,26630069-26630168,26630256-26630351,
           26630464-26630541,26630603-26630671,26630766-26630846,
           26630879-26630935,26631016-26631105,26631192-26631278,
           26631690-26631794,26631899-26631994,26632222-26632397,
           26632847-26633006,26633151-26633600
          Length = 679

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 14/28 (50%), Positives = 17/28 (60%)
 Frame = -1

Query: 547 AQLLGRAIGAXLFXLRQLAKGGCAARRL 464
           A L G A G  L   RQL++GGC  +RL
Sbjct: 85  ASLPGDANGRGLLLARQLSRGGCGEQRL 112


>02_02_0054 -
           6398829-6399047,6399470-6399676,6399858-6400557,
           6400927-6401120
          Length = 439

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 16/45 (35%), Positives = 22/45 (48%)
 Frame = +2

Query: 86  IWITFADRMVKYRRRIFQMSALSTFDGSFCDXHGCHG*XGIXVRF 220
           +WITFA  MV    +   +++  T DG     H   G  GI V+F
Sbjct: 158 LWITFAKSMVIRLTQELLVASDKTIDGRGAQVHIARGGAGITVQF 202


>02_02_0419 - 10009686-10012568
          Length = 960

 Score = 28.7 bits (61), Expect = 6.7
 Identities = 16/54 (29%), Positives = 23/54 (42%)
 Frame = -3

Query: 371 PGPPVLIPITRPRKSPVSLFFVTTCPCREWXXCAPAAFLDVVDRFSGSLSGIEP 210
           P PP    +TR +K  +S   + T     W    P   L  +D    +LSG+ P
Sbjct: 236 PSPPARANLTRLQKLDLSTNVINTSSANSWFWDVPT--LTYLDLSGNALSGVFP 287


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,516,970
Number of Sequences: 37544
Number of extensions: 368911
Number of successful extensions: 652
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 636
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 652
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2542098580
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)