Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0175.Seq
         (870 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0362 + 28739969-28740232,28740336-28740452,28740560-287406...    28   8.5  

>01_06_0362 +
           28739969-28740232,28740336-28740452,28740560-28740660,
           28741251-28741322,28741433-28741514,28741607-28741687,
           28742548-28742589,28743009-28743047,28743278-28743343,
           28743444-28743590,28743638-28743652
          Length = 341

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = +2

Query: 80  SLVAXSEQEYRPALNPVVLIDNGRCGVREVPL 175
           S V  +E+ Y P+++PV+L D  R G + V L
Sbjct: 185 SFVDKTEKRYNPSMSPVILKDKWRKGSQWVAL 216


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,585,531
Number of Sequences: 37544
Number of extensions: 347152
Number of successful extensions: 771
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 746
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 769
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2444475072
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)