Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ps4M0175.Seq
(870 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_56793| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.002
SB_45856| Best HMM Match : DUF755 (HMM E-Value=4.7) 40 0.002
SB_1371| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.003
SB_12256| Best HMM Match : TP1 (HMM E-Value=8.5) 39 0.005
SB_46955| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.099
SB_25877| Best HMM Match : TP1 (HMM E-Value=8.5) 33 0.23
SB_34518| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.30
SB_26769| Best HMM Match : Popeye (HMM E-Value=1.8) 33 0.30
SB_45983| Best HMM Match : HLH (HMM E-Value=1.3) 31 0.93
SB_45914| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.2
SB_49535| Best HMM Match : RVT_1 (HMM E-Value=5.1e-32) 30 2.8
SB_41016| Best HMM Match : RPEL (HMM E-Value=8.9) 30 2.8
SB_39882| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.8
SB_28599| Best HMM Match : MSSP (HMM E-Value=6.8) 30 2.8
SB_10424| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.8
SB_52707| Best HMM Match : RPEL (HMM E-Value=8.9) 30 2.8
SB_34424| Best HMM Match : RNase_U2 (HMM E-Value=7.5) 30 2.8
SB_30254| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.8
SB_8500| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.8
SB_25694| Best HMM Match : RVT_1 (HMM E-Value=1.9e-22) 29 3.7
SB_15796| Best HMM Match : RVT_1 (HMM E-Value=0.00082) 29 3.7
SB_41052| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.9
SB_32381| Best HMM Match : zf-CCHC (HMM E-Value=6.9e-07) 29 4.9
SB_21600| Best HMM Match : zf-CCHC (HMM E-Value=6.9e-07) 29 4.9
SB_56534| Best HMM Match : RVT_1 (HMM E-Value=5.5e-28) 29 6.5
>SB_56793| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 162
Score = 40.3 bits (90), Expect = 0.002
Identities = 20/28 (71%), Positives = 20/28 (71%)
Frame = +1
Query: 355 LPVVICLSQRLSHACXSASRIKAIPRMA 438
LPVVICLSQRLSHAC S S RMA
Sbjct: 134 LPVVICLSQRLSHACLSISTCTVKLRMA 161
>SB_45856| Best HMM Match : DUF755 (HMM E-Value=4.7)
Length = 187
Score = 40.3 bits (90), Expect = 0.002
Identities = 22/41 (53%), Positives = 24/41 (58%), Gaps = 4/41 (9%)
Frame = -2
Query: 344 IFSLRWSLPPA*GCTLKQPDS----KERPSRRDXRRYGPGT 234
IFS RWSLPP GC KQPDS +ERP R + P T
Sbjct: 106 IFSFRWSLPPILGCIPKQPDSSKAHRERP-RSPQTGFSPST 145
>SB_1371| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 138
Score = 39.5 bits (88), Expect = 0.003
Identities = 20/28 (71%), Positives = 20/28 (71%)
Frame = +1
Query: 355 LPVVICLSQRLSHACXSASRIKAIPRMA 438
LPVVICLSQRLSHAC S S RMA
Sbjct: 110 LPVVICLSQRLSHACLSISTRTVKLRMA 137
>SB_12256| Best HMM Match : TP1 (HMM E-Value=8.5)
Length = 156
Score = 39.1 bits (87), Expect = 0.005
Identities = 19/29 (65%), Positives = 20/29 (68%), Gaps = 4/29 (13%)
Frame = -2
Query: 344 IFSLRWSLPPA*GCTLKQPDS----KERP 270
IFS RWSLPP GC KQPDS +ERP
Sbjct: 75 IFSFRWSLPPILGCIPKQPDSSKAHRERP 103
>SB_46955| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 112
Score = 34.7 bits (76), Expect = 0.099
Identities = 14/29 (48%), Positives = 19/29 (65%)
Frame = -2
Query: 347 VIFSLRWSLPPA*GCTLKQPDSKERPSRR 261
++ + RWSLPP GC KQPDS + +R
Sbjct: 30 LLHTRRWSLPPILGCIPKQPDSSKAHRKR 58
>SB_25877| Best HMM Match : TP1 (HMM E-Value=8.5)
Length = 139
Score = 33.5 bits (73), Expect = 0.23
Identities = 16/25 (64%), Positives = 17/25 (68%), Gaps = 4/25 (16%)
Frame = -2
Query: 332 RWSLPPA*GCTLKQPDS----KERP 270
RWSLPP GC KQPDS +ERP
Sbjct: 62 RWSLPPILGCIPKQPDSSKAHRERP 86
>SB_34518| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 337
Score = 33.1 bits (72), Expect = 0.30
Identities = 14/20 (70%), Positives = 15/20 (75%)
Frame = -3
Query: 337 ALDGVYHPLRAALSSNPTLR 278
ALDGVYHP AA +NPT R
Sbjct: 58 ALDGVYHPFWAAFPNNPTRR 77
>SB_26769| Best HMM Match : Popeye (HMM E-Value=1.8)
Length = 411
Score = 33.1 bits (72), Expect = 0.30
Identities = 14/20 (70%), Positives = 15/20 (75%)
Frame = -3
Query: 337 ALDGVYHPLRAALSSNPTLR 278
ALDGVYHP AA +NPT R
Sbjct: 344 ALDGVYHPFWAAFPNNPTRR 363
>SB_45983| Best HMM Match : HLH (HMM E-Value=1.3)
Length = 68
Score = 31.5 bits (68), Expect = 0.93
Identities = 13/19 (68%), Positives = 14/19 (73%)
Frame = -3
Query: 334 LDGVYHPLRAALSSNPTLR 278
LDGVYHP AA +NPT R
Sbjct: 2 LDGVYHPFWAAFPNNPTRR 20
>SB_45914| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 206
Score = 31.1 bits (67), Expect = 1.2
Identities = 13/20 (65%), Positives = 14/20 (70%)
Frame = -3
Query: 337 ALDGVYHPLRAALSSNPTLR 278
ALDG YHP AA +NPT R
Sbjct: 58 ALDGFYHPFWAAFPNNPTRR 77
>SB_49535| Best HMM Match : RVT_1 (HMM E-Value=5.1e-32)
Length = 991
Score = 29.9 bits (64), Expect = 2.8
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = -2
Query: 281 KERPSRRDXRRYGPGTLYGKTAPFKTNLDRSRRDEKAEPP 162
K +P+RR+ +R G G + KTN ++ R+ + PP
Sbjct: 44 KRQPNRRNNQRKGRGNIGNNGGQQKTNGNKRRQTQDPRPP 83
>SB_41016| Best HMM Match : RPEL (HMM E-Value=8.9)
Length = 148
Score = 29.9 bits (64), Expect = 2.8
Identities = 12/17 (70%), Positives = 14/17 (82%)
Frame = +1
Query: 292 CLRVQP*AGGKLHLRLN 342
CL +QP GGKLHL+LN
Sbjct: 62 CLGMQPKMGGKLHLKLN 78
>SB_39882| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 94
Score = 29.9 bits (64), Expect = 2.8
Identities = 12/17 (70%), Positives = 14/17 (82%)
Frame = +1
Query: 292 CLRVQP*AGGKLHLRLN 342
CL +QP GGKLHL+LN
Sbjct: 8 CLGMQPKMGGKLHLKLN 24
>SB_28599| Best HMM Match : MSSP (HMM E-Value=6.8)
Length = 148
Score = 29.9 bits (64), Expect = 2.8
Identities = 12/17 (70%), Positives = 14/17 (82%)
Frame = +1
Query: 292 CLRVQP*AGGKLHLRLN 342
CL +QP GGKLHL+LN
Sbjct: 62 CLGMQPKMGGKLHLKLN 78
>SB_10424| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 77
Score = 29.9 bits (64), Expect = 2.8
Identities = 12/17 (70%), Positives = 14/17 (82%)
Frame = +1
Query: 292 CLRVQP*AGGKLHLRLN 342
CL +QP GGKLHL+LN
Sbjct: 36 CLGMQPKMGGKLHLKLN 52
>SB_52707| Best HMM Match : RPEL (HMM E-Value=8.9)
Length = 147
Score = 29.9 bits (64), Expect = 2.8
Identities = 12/17 (70%), Positives = 14/17 (82%)
Frame = +1
Query: 292 CLRVQP*AGGKLHLRLN 342
CL +QP GGKLHL+LN
Sbjct: 61 CLGMQPKMGGKLHLKLN 77
>SB_34424| Best HMM Match : RNase_U2 (HMM E-Value=7.5)
Length = 206
Score = 29.9 bits (64), Expect = 2.8
Identities = 12/17 (70%), Positives = 14/17 (82%)
Frame = +1
Query: 292 CLRVQP*AGGKLHLRLN 342
CL +QP GGKLHL+LN
Sbjct: 120 CLGMQPKMGGKLHLKLN 136
>SB_30254| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 105
Score = 29.9 bits (64), Expect = 2.8
Identities = 12/17 (70%), Positives = 14/17 (82%)
Frame = +1
Query: 292 CLRVQP*AGGKLHLRLN 342
CL +QP GGKLHL+LN
Sbjct: 19 CLGMQPKMGGKLHLKLN 35
>SB_8500| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3408
Score = 29.9 bits (64), Expect = 2.8
Identities = 12/17 (70%), Positives = 14/17 (82%)
Frame = +1
Query: 292 CLRVQP*AGGKLHLRLN 342
CL +QP GGKLHL+LN
Sbjct: 725 CLGMQPKMGGKLHLKLN 741
>SB_25694| Best HMM Match : RVT_1 (HMM E-Value=1.9e-22)
Length = 1797
Score = 29.5 bits (63), Expect = 3.7
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = +2
Query: 374 CLKD*AMHVSVQAVLRRYREWLNISVLVP*ILLSYXDNCGNS 499
CL D A+ ++ + +Y W+N+ +LV L + CG+S
Sbjct: 450 CLYDKAVFLTDEEYAAKYGRWVNVQMLVEEPELHFIAKCGSS 491
>SB_15796| Best HMM Match : RVT_1 (HMM E-Value=0.00082)
Length = 1304
Score = 29.5 bits (63), Expect = 3.7
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = +2
Query: 374 CLKD*AMHVSVQAVLRRYREWLNISVLVP*ILLSYXDNCGNS 499
CL D A+ ++ + +Y W+N+ +LV L + CG+S
Sbjct: 869 CLYDKAVFLTDEEYAAKYGRWVNVQMLVEEPELHFIAKCGSS 910
>SB_41052| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 732
Score = 29.1 bits (62), Expect = 4.9
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = -2
Query: 281 KERPSRRDXRRYGPGTLYGKTAPFKTNLDRSRRDEKAEPP 162
K +P+RR+ +R G G + KTN ++ R+ + PP
Sbjct: 203 KRQPNRRNNQRKGRGNNGNNSGQQKTNGNKRRQTQDLRPP 242
>SB_32381| Best HMM Match : zf-CCHC (HMM E-Value=6.9e-07)
Length = 282
Score = 29.1 bits (62), Expect = 4.9
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = -2
Query: 281 KERPSRRDXRRYGPGTLYGKTAPFKTNLDRSRRDEKAEPP 162
K +P+RR+ +R G G + KTN ++ R+ + PP
Sbjct: 190 KRQPNRRNNQRKGRGNNGNNSGQQKTNGNKRRQTQDRRPP 229
>SB_21600| Best HMM Match : zf-CCHC (HMM E-Value=6.9e-07)
Length = 216
Score = 29.1 bits (62), Expect = 4.9
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = -2
Query: 281 KERPSRRDXRRYGPGTLYGKTAPFKTNLDRSRRDEKAEPP 162
K +P+RR+ +R G G + KTN ++ R+ + PP
Sbjct: 45 KRQPNRRNNQRKGRGNNGNNSGQQKTNGNKRRQTQDRRPP 84
>SB_56534| Best HMM Match : RVT_1 (HMM E-Value=5.5e-28)
Length = 1052
Score = 28.7 bits (61), Expect = 6.5
Identities = 12/40 (30%), Positives = 22/40 (55%)
Frame = -2
Query: 281 KERPSRRDXRRYGPGTLYGKTAPFKTNLDRSRRDEKAEPP 162
K +P+R++ +R G G + KTN ++ R+ + PP
Sbjct: 188 KRQPNRKNNQRKGRGNIGNNGGQQKTNGNKRRQTQDPRPP 227
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,965,171
Number of Sequences: 59808
Number of extensions: 396215
Number of successful extensions: 1087
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 941
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1085
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2491217872
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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