Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0175.Seq
         (870 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U21317-4|AAA62523.1|  719|Caenorhabditis elegans Hypothetical pr...    32   0.61 
AF099921-1|AAC68807.1| 1286|Caenorhabditis elegans Hypothetical ...    29   3.3  
AF040650-3|ABE73333.1|  836|Caenorhabditis elegans Hypothetical ...    29   5.7  
AF040650-2|AAT81190.1|  939|Caenorhabditis elegans Hypothetical ...    29   5.7  
AF040650-1|AAB95011.1|  952|Caenorhabditis elegans Hypothetical ...    29   5.7  

>U21317-4|AAA62523.1|  719|Caenorhabditis elegans Hypothetical
           protein B0495.2 protein.
          Length = 719

 Score = 31.9 bits (69), Expect = 0.61
 Identities = 19/50 (38%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
 Frame = -2

Query: 296 KQPDSKERPSRRDXRR--YGPGTLYGKTAPFKTNLDRSRRDEKAEPPEHH 153
           K+ D K    +RD RR   GP     K   FK   +RS RD+K     HH
Sbjct: 87  KERDKKREKDKRDDRRDVRGPDARQ-KDRDFKGRQERSGRDQKVHEHRHH 135


>AF099921-1|AAC68807.1| 1286|Caenorhabditis elegans Hypothetical
           protein M01E10.2 protein.
          Length = 1286

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
 Frame = -3

Query: 289 PTLRSVPLAATXVATGLAPSTGKRPRSRRT---WTGVVATRKRNLPNTTSPVI 140
           PT+++ P       T    ST + PR+++T   WT    T ++  P T +P I
Sbjct: 369 PTIQTPPPTTQTPPTTQTSSTTQTPRTKQTWAPWTPPTTTTRQTPPTTQAPPI 421


>AF040650-3|ABE73333.1|  836|Caenorhabditis elegans Hypothetical
           protein T04B8.5c protein.
          Length = 836

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
 Frame = -3

Query: 715 RDNHGSRRNYHRKLISRHLKDASPVL--DHAICKSYPDSSKLTTSDARPSVD 566
           +D H   R     L +  ++  S V+  DH +C   P ++  + + A PSVD
Sbjct: 716 QDMHRRERQLKNMLQTLRIEGESSVVPWDHVVCHYQPPNATASANTATPSVD 767


>AF040650-2|AAT81190.1|  939|Caenorhabditis elegans Hypothetical
           protein T04B8.5b protein.
          Length = 939

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
 Frame = -3

Query: 715 RDNHGSRRNYHRKLISRHLKDASPVL--DHAICKSYPDSSKLTTSDARPSVD 566
           +D H   R     L +  ++  S V+  DH +C   P ++  + + A PSVD
Sbjct: 819 QDMHRRERQLKNMLQTLRIEGESSVVPWDHVVCHYQPPNATASANTATPSVD 870


>AF040650-1|AAB95011.1|  952|Caenorhabditis elegans Hypothetical
           protein T04B8.5a protein.
          Length = 952

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
 Frame = -3

Query: 715 RDNHGSRRNYHRKLISRHLKDASPVL--DHAICKSYPDSSKLTTSDARPSVD 566
           +D H   R     L +  ++  S V+  DH +C   P ++  + + A PSVD
Sbjct: 832 QDMHRRERQLKNMLQTLRIEGESSVVPWDHVVCHYQPPNATASANTATPSVD 883


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,894,841
Number of Sequences: 27780
Number of extensions: 274112
Number of successful extensions: 737
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 651
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 737
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2181923744
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)