Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0175.Seq
         (870 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g46710.1 68418.m05755 zinc-binding family protein similar zin...    28   7.1  
At3g26780.1 68416.m03350 phosphoglycerate/bisphosphoglycerate mu...    28   7.1  
At5g37020.1 68418.m04440 auxin-responsive factor (ARF8) identica...    28   9.3  
At5g24150.1 68418.m02839 squalene monooxygenase 1,1 / squalene e...    28   9.3  
At2g43370.1 68415.m05392 U1 small nuclear ribonucleoprotein 70 k...    28   9.3  
At2g27930.1 68415.m03385 zinc-binding family protein similar to ...    28   9.3  
At2g27100.1 68415.m03256 C2H2 zinc-finger protein SERRATE (SE) i...    28   9.3  
At1g03960.1 68414.m00381 calcium-binding EF hand family protein ...    28   9.3  

>At5g46710.1 68418.m05755 zinc-binding family protein similar
           zinc-binding protein [Pisum sativum] GI:16117799;
           contains Pfam profile PF04640 : Protein of unknown
           function, DUF597
          Length = 226

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +1

Query: 622 CRSHGQVPATHLSNVCLSTFDGSFC 696
           C+ HG +P T     CL   + SFC
Sbjct: 43  CKFHGHLPRTECKMYCLDCTNDSFC 67


>At3g26780.1 68416.m03350 phosphoglycerate/bisphosphoglycerate
           mutase family protein similar to X4 protein GI:21386798,
           Y4 protein GI:21386800 from  [Silene dioica]; contains
           Pfam profiles PF00300: phosphoglycerate mutase family,
           PF01535: PPR repeat
          Length = 1053

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 15/46 (32%), Positives = 21/46 (45%)
 Frame = +1

Query: 568 RRRASRPKSLILMNLDNFCRSHGQVPATHLSNVCLSTFDGSFCDYH 705
           +R   +P S+I  +L   CR H  V    +S   L   D S C Y+
Sbjct: 842 QRMKMKPDSIIWSSLLAACRIHKNVELAEISVARLFELDSSNCGYY 887


>At5g37020.1 68418.m04440 auxin-responsive factor (ARF8) identical
           to auxin response factor 8 GI:4104931 from [Arabidopsis
           thaliana]
          Length = 811

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -1

Query: 147 PLSIKTTGFSAGLYSCSLXATKEIL 73
           P+S+  +GF   LYSC    T E+L
Sbjct: 668 PMSLTDSGFQNSLYSCMQDTTHELL 692


>At5g24150.1 68418.m02839 squalene monooxygenase 1,1 / squalene
           epoxidase 1,1 (SQP1,1) identical to SP|O65404
          Length = 516

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 12/18 (66%), Positives = 12/18 (66%)
 Frame = -1

Query: 279 GASLSPRPSSLRAWHPLR 226
           G  LSP PS LR WH LR
Sbjct: 459 GHLLSPFPSPLRIWHSLR 476


>At2g43370.1 68415.m05392 U1 small nuclear ribonucleoprotein 70 kDa,
           putative 
          Length = 333

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 19/51 (37%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
 Frame = -2

Query: 287 DSKERPSRRDXRRYGP--GTLYGKTAPFKTNLDRSRRDEKAEPPEHHISRY 141
           D KER +R    RYG   G + G     ++  DRSR+  K  P  HH   Y
Sbjct: 276 DRKER-ARGMEDRYGDNKGEVSGSKRSKRSEEDRSRKRHKHLPSHHHRRSY 325


>At2g27930.1 68415.m03385 zinc-binding family protein similar to
           zinc-binding protein [Pisum sativum] GI:16117799;
           contains Pfam profile PF04640 : Protein of unknown
           function, DUF597
          Length = 135

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 11/38 (28%), Positives = 18/38 (47%)
 Frame = +1

Query: 589 KSLILMNLDNFCRSHGQVPATHLSNVCLSTFDGSFCDY 702
           + L+  N  + C  H + P    +  CLS  + +FC Y
Sbjct: 8   EGLLRTNFFSICPRHRETPRNECNMFCLSCQNAAFCFY 45


>At2g27100.1 68415.m03256 C2H2 zinc-finger protein SERRATE (SE)
           identical to C2H2 zinc-finger protein SERRATE
           GI:14486602 from [Arabidopsis thaliana]
          Length = 720

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 18/60 (30%), Positives = 25/60 (41%), Gaps = 1/60 (1%)
 Frame = -2

Query: 296 KQPDSKERPSRRDXRRYGPGTLYGKTAPF-KTNLDRSRRDEKAEPPEHHISRYRLKQRDS 120
           ++ DS+ER   RD  R  P       +P      D  RR   + PP +   R+   QR S
Sbjct: 50  RERDSRERRDERDIERPPPNRRERDRSPLPPPRRDYKRRPSLSPPPPYRDRRHSPPQRRS 109


>At1g03960.1 68414.m00381 calcium-binding EF hand family protein
           contains Pfam profile: PF00036 EF hand
          Length = 529

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 14/36 (38%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
 Frame = +1

Query: 610 LDNFCRSHGQVPATHLSNVCLSTFDGSFCDY-HGCH 714
           +  F   HG+ PA  L   CLS  D  F +Y  G H
Sbjct: 119 IPQFYYQHGRPPAKELKEQCLSMVDQVFSNYIDGLH 154


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,310,483
Number of Sequences: 28952
Number of extensions: 265993
Number of successful extensions: 601
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 593
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 601
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 2038669600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)