Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0173.Seq
         (822 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1786.02 |||phospholipase |Schizosaccharomyces pombe|chr 1|||...    27   3.2  
SPAC16C9.07 |ppk5|SPAC2G11.01, mug189|serine/threonine protein k...    25   9.8  
SPAC17A5.11 |rec12|spo11|endonuclease Rec12|Schizosaccharomyces ...    25   9.8  

>SPAC1786.02 |||phospholipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 644

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +3

Query: 456 FWGRGAVKH*IGTLKGAP 509
           +WGR   +H +G L+G P
Sbjct: 227 YWGRAIARHFVGQLRGGP 244


>SPAC16C9.07 |ppk5|SPAC2G11.01, mug189|serine/threonine protein
           kinase Ppk5 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 836

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = -2

Query: 383 SPRSLIVDSCSKLEQHSTLXRSILLI 306
           SP +L   +CS L  HST    + L+
Sbjct: 28  SPNNLTEQTCSPLRAHSTFKEPVFLL 53


>SPAC17A5.11 |rec12|spo11|endonuclease Rec12|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 345

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 10/33 (30%), Positives = 16/33 (48%)
 Frame = -2

Query: 446 RVMVHVVGHRPDRRFXAL*RWSPRSLIVDSCSK 348
           + +V +    PD +F  +  W P  L + SC K
Sbjct: 210 KFLVKLAKALPDAKFFGIFDWDPHGLCIYSCFK 242


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,724,736
Number of Sequences: 5004
Number of extensions: 49789
Number of successful extensions: 91
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 91
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 402440190
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)