Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0173.Seq
         (822 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0383 - 3405986-3407359,3409283-3410827                           31   1.5  
06_03_0635 - 22971502-22973840,22974112-22974403,22974639-229751...    31   1.5  
05_03_0336 - 12643942-12644816,12645021-12645276,12645667-12646380     29   4.5  

>08_01_0383 - 3405986-3407359,3409283-3410827
          Length = 972

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 16/61 (26%), Positives = 29/61 (47%)
 Frame = -3

Query: 247 FNANFNKILTXTICHSPLQVRNCWEGXSVRASSLLRQLAKGGCAARRLSWVTARVFPVTM 68
           F  N++++     CH  LQVR+     + R+SSL  ++   G +   LS+      P  +
Sbjct: 508 FLGNYDRLQASCACHPDLQVRSPVSDSTSRSSSLAIRVRSSGHSYEGLSYTVENHVPFVV 567

Query: 67  L 65
           +
Sbjct: 568 I 568


>06_03_0635 - 22971502-22973840,22974112-22974403,22974639-22975162,
            22975314-22975583,22976393-22977124,22977226-22977310
          Length = 1413

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 19/58 (32%), Positives = 28/58 (48%)
 Frame = +3

Query: 72   VTGKTLAVTQLNRLAAHPPFASWRNSEEARTDXPSQQLRTCNGEWQIVXVNILLKFAL 245
            +TG  +A  ++    A PP  S+  SE+A+     QQ R  NG   +V   +LL   L
Sbjct: 1068 ITGLGVAGQEMMATLASPPSLSYNKSEDAQIGNDQQQPRGDNGIASVVTGLLLLPHQL 1125


>05_03_0336 - 12643942-12644816,12645021-12645276,12645667-12646380
          Length = 614

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 1/73 (1%)
 Frame = +3

Query: 57  SFYNIVTGKTLAVTQLNRLAAH-PPFASWRNSEEARTDXPSQQLRTCNGEWQIVXVNILL 233
           +F N ++   +  TQL +LAA  P   SWR   +  +   + +  T  G  Q + +N+ L
Sbjct: 275 AFQNQLSFNKMIETQLAQLAALIPANESWRIPGQPDSSIENVKAITTRGVIQKIHINVPL 334

Query: 234 KFALNFCKSAHFL 272
             A+     AH+L
Sbjct: 335 LDAMQVPTYAHYL 347


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,336,909
Number of Sequences: 37544
Number of extensions: 359505
Number of successful extensions: 776
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 761
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 776
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2256438528
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)