Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0172.Seq
         (923 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCP31B10.03c |med31|soh1, sep10|mediator complex subunit Med31|...    29   0.70 
SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit Bgs3|Schizo...    27   3.7  
SPBC776.12c |hsk1||serine/threonine protein kinase Hsk1|Schizosa...    26   6.5  
SPCC1223.03c |gut2||glycerol-3-phosphate dehydrogenase Gut2|Schi...    26   8.6  

>SPCP31B10.03c |med31|soh1, sep10|mediator complex subunit
           Med31|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 139

 Score = 29.5 bits (63), Expect = 0.70
 Identities = 15/46 (32%), Positives = 24/46 (52%)
 Frame = +2

Query: 116 VQFFIFSVCVHIVTLFTYIIYYSDIFASIYLKTVETEYDYIIVGSG 253
           V+F I+  C+H++TL     + +DI  +   K V  E  Y  +G G
Sbjct: 63  VKFIIYPTCLHMLTLLKNPQFRNDISRADLSKQVNDEIYYEWLGKG 108


>SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit
           Bgs3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1826

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -2

Query: 340 NHDPCFLLPILYMCS*SLWLCDVLLWSQL 254
           +H P FLL ++Y+    L+  D  LW  L
Sbjct: 645 SHQPKFLLSLVYLTDLVLFFLDTYLWYML 673


>SPBC776.12c |hsk1||serine/threonine protein kinase
           Hsk1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 507

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = +3

Query: 582 EFVEKHFLHLDDLQYESKLVDSVLSAATEFGYKILESEFDL 704
           E ++  FL+LD+L YE K  D+       FG    E + DL
Sbjct: 426 EALDHDFLYLDNLAYEKKDDDTAFD--NSFGETSFEKDEDL 464


>SPCC1223.03c |gut2||glycerol-3-phosphate dehydrogenase
           Gut2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 649

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = -2

Query: 526 CEMLPRHVPCYLIWMIPQLFCLEGVCIYGQPCPSKH 419
           C +LP  +P Y  W +P  F   G  IY     SK+
Sbjct: 153 CTVLPIMIPVYKWWQVPYFFV--GCKIYDWVAGSKN 186


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,674,856
Number of Sequences: 5004
Number of extensions: 77048
Number of successful extensions: 167
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 167
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 467341524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)