Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0172.Seq
         (923 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_59581| Best HMM Match : No HMM Matches (HMM E-Value=.)              49   6e-06
SB_47865| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.3  
SB_47303| Best HMM Match : CPSF_A (HMM E-Value=0)                      28   9.3  
SB_41709| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.3  
SB_11783| Best HMM Match : C4 (HMM E-Value=1)                          28   9.3  

>SB_59581| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 361

 Score = 48.8 bits (111), Expect = 6e-06
 Identities = 29/91 (31%), Positives = 50/91 (54%), Gaps = 2/91 (2%)
 Frame = +1

Query: 241 CWIWQAGSIIAHRIATETNYTYIVLEAGSKGHGL-LDIPVLSPF-LHKSVYDWNYETSPQ 414
           C    AG ++A+R++ + +   ++LEAG K     + +P    + L    Y+W Y T+PQ
Sbjct: 169 CGAGSAGCVLANRLSADPDSKVLLLEAGPKDRTWKIHMPAALIYNLCDDKYNWYYHTAPQ 228

Query: 415 ENACWGMVDHKCRLPQGKIVGGSSKLNNMVH 507
           ++    M +     P+G++ GGSS LN MV+
Sbjct: 229 KH----MNNRVMYCPRGRVWGGSSSLNAMVY 255


>SB_47865| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1273

 Score = 28.3 bits (60), Expect = 9.3
 Identities = 17/50 (34%), Positives = 28/50 (56%)
 Frame = +1

Query: 325 SKGHGLLDIPVLSPFLHKSVYDWNYETSPQENACWGMVDHKCRLPQGKIV 474
           +  HG+ +I VL     K ++ ++YETS   +A   MV+   R+P G +V
Sbjct: 450 NNSHGV-NIVVLEMLTFKVLHVFSYETSRDLSAVCRMVEDIGRIPVGALV 498


>SB_47303| Best HMM Match : CPSF_A (HMM E-Value=0)
          Length = 1291

 Score = 28.3 bits (60), Expect = 9.3
 Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
 Frame = +2

Query: 71   VFKISTNIKMNFSYCVQFF-IFSVCVHIVTLFTYIIYYSDIFASIYL 208
            VF ++      FS  + F  +FSV +  +T+F+ II +  +F+ I L
Sbjct: 1151 VFSVTILFITVFSVTILFITVFSVIILFITVFSVIILFITVFSIIIL 1197


>SB_41709| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 460

 Score = 28.3 bits (60), Expect = 9.3
 Identities = 21/76 (27%), Positives = 37/76 (48%), Gaps = 17/76 (22%)
 Frame = +3

Query: 507 CRGNISHYADWFHRKYSNDY-------IKKQFEFVEKHF---LHLDDLQYESKLVDS--- 647
           CR +++HY D   RK+S D        I+K  E++   F   +   D +++ ++++S   
Sbjct: 70  CRSHLNHYLDELDRKFSVDLRDQEVINIRKDMEYIASQFAKKVACHDARFKGEILNSGSH 129

Query: 648 ----VLSAATEFGYKI 683
                +SA  EF Y I
Sbjct: 130 YEGLQVSAPDEFDYMI 145


>SB_11783| Best HMM Match : C4 (HMM E-Value=1)
          Length = 565

 Score = 28.3 bits (60), Expect = 9.3
 Identities = 10/19 (52%), Positives = 15/19 (78%)
 Frame = +2

Query: 377 NRFMIGTMKHHHRKMLAGA 433
           N+ + G +K HH++MLAGA
Sbjct: 368 NKLVSGQLKKHHQRMLAGA 386


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,332,338
Number of Sequences: 59808
Number of extensions: 527686
Number of successful extensions: 927
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 877
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 922
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2681370225
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)