Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0172.Seq
         (923 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g27500.1 68416.m03438 DC1 domain-containing protein contains ...    29   4.4  
At5g36950.1 68418.m04431 DegP protease, putative contains simila...    28   7.6  

>At3g27500.1 68416.m03438 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 609

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = -2

Query: 172 YICEQCDYMNTHAKYEKLYTV*KVHFN 92
           YIC QCD+M  H K  +L  V  +H N
Sbjct: 267 YICVQCDFMTFHQKCARLPRV--IHVN 291


>At5g36950.1 68418.m04431 DegP protease, putative contains
           similarity to DegP2 protease GI:13172275 from
           [Arabidopsis thaliana]
          Length = 586

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +1

Query: 337 GLLDIPVLSPFLHKSVYDWNYETSPQ 414
           G + +P+  P+LH+   DW Y TSP+
Sbjct: 440 GFVFVPLTQPYLHEYGEDW-YNTSPR 464


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,602,149
Number of Sequences: 28952
Number of extensions: 381961
Number of successful extensions: 849
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 828
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 849
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2197951248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)