Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0165.Seq
         (853 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U88180-6|AAB42300.1|  373|Caenorhabditis elegans Hypothetical pr...    28   7.3  
AL161712-21|CAC70129.2|  729|Caenorhabditis elegans Hypothetical...    28   7.3  
AF067623-5|AAC17555.3| 1043|Caenorhabditis elegans Guanylyl cycl...    28   7.3  
AB201390-1|BAE78830.1| 1073|Caenorhabditis elegans recepotor typ...    28   7.3  

>U88180-6|AAB42300.1|  373|Caenorhabditis elegans Hypothetical
           protein T27A3.7 protein.
          Length = 373

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
 Frame = +2

Query: 698 RDRVEC--CS-SLEQESLLKNVDSKSXGEKPLSGXWPLREPSPQS 823
           +D VEC  C+ +L    +LK +D+K     P S     R PSP S
Sbjct: 280 QDNVECQKCNQNLSLNEVLKQIDTKKATGVPRSRDTVARSPSPDS 324


>AL161712-21|CAC70129.2|  729|Caenorhabditis elegans Hypothetical
           protein Y66D12A.5 protein.
          Length = 729

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 13/46 (28%), Positives = 24/46 (52%)
 Frame = +2

Query: 686 KRIDRDRVECCSSLEQESLLKNVDSKSXGEKPLSGXWPLREPSPQS 823
           +R++R + E    +++E  L + D      + L    P REPSP++
Sbjct: 25  QRLERKKCEASEHVKEEQKLSDDDENDFHFEELESPPPPREPSPKA 70


>AF067623-5|AAC17555.3| 1043|Caenorhabditis elegans Guanylyl cyclase
            protein 23 protein.
          Length = 1043

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 16/67 (23%), Positives = 29/67 (43%)
 Frame = -2

Query: 846  GTFAPKKLDWGDGSRXGHXPDSGFSPXDLESTFFNRDSCSKLEQHSTLSRSILLIYKGFX 667
            G  AP+   +GD        +S   P  ++ +   RD C +      ++    +  KG  
Sbjct: 958  GLTAPRYCLFGDTVNVASRMESTSEPEKIQMSQEARDFCVRYYSEFQITLRGTVEAKGKG 1017

Query: 666  PISAYWL 646
            P+++YWL
Sbjct: 1018 PVTSYWL 1024


>AB201390-1|BAE78830.1| 1073|Caenorhabditis elegans recepotor type
            guanyly cyclase protein.
          Length = 1073

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 16/67 (23%), Positives = 29/67 (43%)
 Frame = -2

Query: 846  GTFAPKKLDWGDGSRXGHXPDSGFSPXDLESTFFNRDSCSKLEQHSTLSRSILLIYKGFX 667
            G  AP+   +GD        +S   P  ++ +   RD C +      ++    +  KG  
Sbjct: 988  GLTAPRYCLFGDTVNVASRMESTSEPEKIQMSQEARDFCVRYYSEFQITLRGTVEAKGKG 1047

Query: 666  PISAYWL 646
            P+++YWL
Sbjct: 1048 PVTSYWL 1054


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,959,025
Number of Sequences: 27780
Number of extensions: 350101
Number of successful extensions: 700
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 675
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 700
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2118983636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)