Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0164.Seq
         (883 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB196633-1|BAE53435.1| 1857|Homo sapiens C8orfK23 protein protein.     31   7.3  
U47924-15|AAB51321.1| 1190|Homo sapiens DRPLA protein.                 30   9.7  
U23851-1|AAB50276.1| 1184|Homo sapiens atrophin-1 protein.             30   9.7  
D38529-1|BAA07534.1| 1182|Homo sapiens DRPLA protein protein.          30   9.7  
D31840-1|BAA06626.1| 1185|Homo sapiens DRPLA protein.                  30   9.7  
BC051795-1|AAH51795.1| 1191|Homo sapiens atrophin 1 protein.           30   9.7  
AB209345-1|BAD92582.1|  774|Homo sapiens atrophin-1 variant prot...    30   9.7  

>AB196633-1|BAE53435.1| 1857|Homo sapiens C8orfK23 protein protein.
          Length = 1857

 Score = 30.7 bits (66), Expect = 7.3
 Identities = 17/57 (29%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
 Frame = +2

Query: 362  RITIHWP-SFYNVVTGKTLALPNLIALQHIPLSPAGVIAKRPAPIXLPNSAXLNGEW 529
            R+   WP S    +TGK  A  +L+  +    +P G   K P P+  PN    +  W
Sbjct: 1749 RVRGWWPFSKSKELTGKVEAEFHLVTAEEAEKNPVGKARKEPEPLAKPNRPDTSFSW 1805


>U47924-15|AAB51321.1| 1190|Homo sapiens DRPLA protein.
          Length = 1190

 Score = 30.3 bits (65), Expect = 9.7
 Identities = 18/44 (40%), Positives = 22/44 (50%), Gaps = 4/44 (9%)
 Frame = -2

Query: 840 GGPPF--RVPNLGLYGTSTPKNLD*GDGP--RSGXSPXIDGFSP 721
           G PP+  R P+ G Y T+TP     G  P  R+G  P   G SP
Sbjct: 635 GPPPYGKRAPSPGAYKTATPPGYKPGSPPSFRTGTPPGYRGTSP 678


>U23851-1|AAB50276.1| 1184|Homo sapiens atrophin-1 protein.
          Length = 1184

 Score = 30.3 bits (65), Expect = 9.7
 Identities = 18/44 (40%), Positives = 22/44 (50%), Gaps = 4/44 (9%)
 Frame = -2

Query: 840 GGPPF--RVPNLGLYGTSTPKNLD*GDGP--RSGXSPXIDGFSP 721
           G PP+  R P+ G Y T+TP     G  P  R+G  P   G SP
Sbjct: 629 GPPPYGKRAPSPGAYKTATPPGYKPGSPPSFRTGTPPGYRGTSP 672


>D38529-1|BAA07534.1| 1182|Homo sapiens DRPLA protein protein.
          Length = 1182

 Score = 30.3 bits (65), Expect = 9.7
 Identities = 18/44 (40%), Positives = 22/44 (50%), Gaps = 4/44 (9%)
 Frame = -2

Query: 840 GGPPF--RVPNLGLYGTSTPKNLD*GDGP--RSGXSPXIDGFSP 721
           G PP+  R P+ G Y T+TP     G  P  R+G  P   G SP
Sbjct: 630 GPPPYGKRAPSPGAYKTATPPGYKPGSPPSFRTGTPPGYRGTSP 673


>D31840-1|BAA06626.1| 1185|Homo sapiens DRPLA protein.
          Length = 1185

 Score = 30.3 bits (65), Expect = 9.7
 Identities = 18/44 (40%), Positives = 22/44 (50%), Gaps = 4/44 (9%)
 Frame = -2

Query: 840 GGPPF--RVPNLGLYGTSTPKNLD*GDGP--RSGXSPXIDGFSP 721
           G PP+  R P+ G Y T+TP     G  P  R+G  P   G SP
Sbjct: 630 GPPPYGKRAPSPGAYKTATPPGYKPGSPPSFRTGTPPGYRGTSP 673


>BC051795-1|AAH51795.1| 1191|Homo sapiens atrophin 1 protein.
          Length = 1191

 Score = 30.3 bits (65), Expect = 9.7
 Identities = 18/44 (40%), Positives = 22/44 (50%), Gaps = 4/44 (9%)
 Frame = -2

Query: 840 GGPPF--RVPNLGLYGTSTPKNLD*GDGP--RSGXSPXIDGFSP 721
           G PP+  R P+ G Y T+TP     G  P  R+G  P   G SP
Sbjct: 636 GPPPYGKRAPSPGAYKTATPPGYKPGSPPSFRTGTPPGYRGTSP 679


>AB209345-1|BAD92582.1|  774|Homo sapiens atrophin-1 variant
           protein.
          Length = 774

 Score = 30.3 bits (65), Expect = 9.7
 Identities = 18/44 (40%), Positives = 22/44 (50%), Gaps = 4/44 (9%)
 Frame = -2

Query: 840 GGPPF--RVPNLGLYGTSTPKNLD*GDGP--RSGXSPXIDGFSP 721
           G PP+  R P+ G Y T+TP     G  P  R+G  P   G SP
Sbjct: 219 GPPPYGKRAPSPGAYKTATPPGYKPGSPPSFRTGTPPGYRGTSP 262


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 129,140,482
Number of Sequences: 237096
Number of extensions: 2836665
Number of successful extensions: 7525
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7435
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7525
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11270645666
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)