Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0164.Seq
         (883 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g48830.1 68418.m06041 expressed protein                             30   1.8  
At5g25090.1 68418.m02973 plastocyanin-like domain-containing pro...    30   1.8  
At1g03080.1 68414.m00282 kinase interacting family protein simil...    29   4.1  
At5g24280.1 68418.m02856 expressed protein ; expression supporte...    28   9.5  

>At5g48830.1 68418.m06041 expressed protein
          Length = 511

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = +1

Query: 691 IKERGTPTSKGRKTVYXGRXATTWTITLIKVFGGRGAVK 807
           I E GT  S GR+T + G   + W +  +K+     A+K
Sbjct: 130 IPEVGTSKSSGRETDFEGDLKSVWDVVKVKLLDSLDAIK 168


>At5g25090.1 68418.m02973 plastocyanin-like domain-containing
           protein
          Length = 186

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 18/42 (42%), Positives = 22/42 (52%)
 Frame = -1

Query: 394 VVKRRPVNCNTTHYRANWVPGPPFVK*ILSNYKPYEITSGTK 269
           V K   +NCNTT+  AN+  G   VK  L    PY   SG+K
Sbjct: 74  VTKDAYINCNTTNPAANYSNGDTKVK--LERSGPYFFISGSK 113


>At1g03080.1 68414.m00282 kinase interacting family protein similar to
            kinase interacting protein 1 (GI:13936326) [Petunia
            integrifolia]
          Length = 1744

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +1

Query: 631  IKRIDRDRVECCSSLEQESTIKERGTPTSKGR 726
            ++ +  + VE C +LE  ST+K+R     KGR
Sbjct: 1340 LEGLTNELVEACKNLESRSTLKDREIEQLKGR 1371


>At5g24280.1 68418.m02856 expressed protein ; expression supported
           by MPSS
          Length = 1634

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 17/37 (45%), Positives = 21/37 (56%)
 Frame = -3

Query: 725 RPFDVGVPRSLIVDSCSKLEQHSTLSRSILLIYKGFC 615
           RP + G   S I+D  SKLE  S+LS  I +I  G C
Sbjct: 681 RPENEGCKLS-IIDGISKLEVQSSLSLPITIIDSGKC 716


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,817,027
Number of Sequences: 28952
Number of extensions: 384583
Number of successful extensions: 715
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 701
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 715
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 2077687200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)