Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0158.Seq
         (847 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16H5.10c |prp43||ATP-dependent RNA helicase Prp43|Schizosacc...    29   0.63 
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc...    27   3.3  

>SPBC16H5.10c |prp43||ATP-dependent RNA helicase
           Prp43|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 735

 Score = 29.5 bits (63), Expect = 0.63
 Identities = 18/66 (27%), Positives = 35/66 (53%)
 Frame = +2

Query: 314 AVXELPLSQSPDKHGFYTALHRGGARYPIRPIVSRITIHWPSFYNVVTGKTLALPNLIAL 493
           A+ EL      D +G  T L R  + +P+ P ++ + I  P FY   + + L+L  L+++
Sbjct: 476 ALEELNYLNCLDDNGDLTPLGRKASEFPLDPNLAVMLIRSPEFY--CSNEVLSLTALLSV 533

Query: 494 QHIPLR 511
            ++ +R
Sbjct: 534 PNVFVR 539


>SPAC29B12.07 |sec16||multidomain vesicle coat component
            Sec16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1995

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 13/35 (37%), Positives = 16/35 (45%)
 Frame = +1

Query: 457  WENPGVTQLNRLAAHPPSPAGVIAKRPAPIALPNS 561
            W N   + L+  AA PP P   + K   P A P S
Sbjct: 1868 WVNDDGSDLSNQAAPPPPPPMALPKAGPPSAAPTS 1902


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,219,608
Number of Sequences: 5004
Number of extensions: 61663
Number of successful extensions: 118
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 418457710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)