Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0158.Seq
         (847 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0013 - 19252779-19252805,19252947-19253090,19253572-192536...    31   1.5  
09_02_0036 + 3217163-3217584,3217752-3218322                           30   2.0  
07_01_0753 - 5799733-5799741,5799938-5800642                           29   3.5  
08_01_0998 - 10136050-10138356                                         28   8.1  

>11_06_0013 -
           19252779-19252805,19252947-19253090,19253572-19253663,
           19253757-19253835,19253965-19254031,19254163-19254254,
           19254986-19255102,19255254-19255365,19255479-19255594,
           19255680-19255756,19255912-19255993,19256077-19256214,
           19258806-19259009
          Length = 448

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 13/40 (32%), Positives = 24/40 (60%)
 Frame = -3

Query: 404 GELGTGPPLDVTPYKNRVYQGFVKGATXQPLIYGPNIKDW 285
           G +G+G  L +T Y ++++ G V   T   ++YG ++ DW
Sbjct: 190 GNIGSGSML-ITRYHHQMFVGLVLVVTYLVILYGLHVPDW 228


>09_02_0036 + 3217163-3217584,3217752-3218322
          Length = 330

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 13/28 (46%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
 Frame = +2

Query: 419 ITIHWPSFYNVV-TGKTLALPNLIALQH 499
           I+  W  F N+V +G TL++PN + LQH
Sbjct: 69  ISAGWSRFINLVQSGPTLSIPNYVLLQH 96


>07_01_0753 - 5799733-5799741,5799938-5800642
          Length = 237

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 16/31 (51%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
 Frame = -3

Query: 218 PPPTN*FLPV-KPLLIVQIRLVWRSLPCLAA 129
           PPPT  F+PV  P+L+   RL  R +PCL A
Sbjct: 52  PPPTLVFVPVTSPVLVRLRRLRPRRVPCLRA 82


>08_01_0998 - 10136050-10138356
          Length = 768

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = -3

Query: 185 PLLIVQIRLVWRSLPCLAAIPVMXAEVKRLLSWKISVXRGMSAS 54
           PL I  + L+  + PC ++  +   E + LL WK ++    SAS
Sbjct: 15  PLRISLLLLLLSTPPCSSSTIIQHGEAESLLRWKSTLSAAASAS 58


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,586,947
Number of Sequences: 37544
Number of extensions: 462802
Number of successful extensions: 1090
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1065
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1090
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2350456800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)