Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0158.Seq
         (847 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g77590.1 68414.m09034 long-chain-fatty-acid--CoA ligase famil...    29   3.9  
At1g08910.1 68414.m00991 zinc finger (MIZ type) family protein s...    28   9.0  

>At1g77590.1 68414.m09034 long-chain-fatty-acid--CoA ligase family
           protein / long-chain acyl-CoA synthetase family protein
           (LACS9) similar to LACS 3 [SP|O95573] from Homo Sapiens,
           LACS 3 [SP|Q63151] from Rattus norvegicus; contains Pfam
           HMM hit: AMP-binding enzymes PF00501
          Length = 691

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = +2

Query: 350 KHGFYTALHRGGARYPIRPIVSRITIHWPSFYNVVTGKTLA 472
           +HG Y +L +  A   I P V  I +H  SFY+      +A
Sbjct: 559 QHGEYVSLGKVEAALSISPYVENIMVHADSFYSYCVALVVA 599


>At1g08910.1 68414.m00991 zinc finger (MIZ type) family protein
           similar to putative variable cytadhesin protein
           (GI:7677312) {Mycoplasma gallisepticum}; contains Pfam
           PF02891: MIZ zinc finger domain
          Length = 842

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 14/52 (26%), Positives = 26/52 (50%)
 Frame = -2

Query: 186 TSSYRSNPIGLAEFTXSRRDPGYXSRSKATAELENQRLXGNVSELTEVFARI 31
           T  ++++ I LA FT +   PG+   S+  A +    + GN+ EL  +   +
Sbjct: 17  TKEFQASCISLANFTENFT-PGFGECSEIDAAIGRNEVPGNIQELALILNNV 67


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,436,341
Number of Sequences: 28952
Number of extensions: 343622
Number of successful extensions: 666
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 651
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 666
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1960634400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)