Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0155.Seq
         (948 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4G8.09 |||mitochondrial leucine-tRNA ligase|Schizosaccharomy...    37   0.005
SPBC8D2.19 |mde3||serine/threonine protein kinase Mde3|Schizosac...    27   3.9  
SPBC25H2.02 |ths1||threonine-tRNA ligase Ths1 |Schizosaccharomyc...    27   5.1  
SPAC5H10.01 |||DUF1445 family protein|Schizosaccharomyces pombe|...    26   6.7  
SPAC20G8.10c ||SPAC3A12.01c|beclin family protein|Schizosaccharo...    26   8.9  
SPAC23H3.15c ||SPAC25H1.01c|sequence orphan|Schizosaccharomyces ...    26   8.9  

>SPAC4G8.09 |||mitochondrial leucine-tRNA ligase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 874

 Score = 36.7 bits (81), Expect = 0.005
 Identities = 19/48 (39%), Positives = 29/48 (60%), Gaps = 2/48 (4%)
 Frame = +3

Query: 519 WPVA-DEKAMVEDSTLVVVQVNGKVRAKITVPWTQRKNRFAN-VLARN 656
           WP++ ++K  +E+   + VQ+NGKVR KI +P    +N   N VL  N
Sbjct: 801 WPISKNKKENMEEPVTIPVQINGKVRFKIEMPKLNDENEILNFVLETN 848


>SPBC8D2.19 |mde3||serine/threonine protein kinase
           Mde3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 559

 Score = 27.1 bits (57), Expect = 3.9
 Identities = 17/59 (28%), Positives = 26/59 (44%)
 Frame = +1

Query: 208 IRHTAVYPCDALTENQKRCVAMCIKRSLK*PMISAVVRPSTPQLRAIMELMNKLAKAPT 384
           IR + V  C    E+ K  VA C+        +++V+  STP    +  + N  AK  T
Sbjct: 492 IRDSIVPSCSQPDESNKEGVASCLLLQKSGMEMTSVLEYSTPNPAEVQNICNDHAKFET 550


>SPBC25H2.02 |ths1||threonine-tRNA ligase Ths1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 703

 Score = 26.6 bits (56), Expect = 5.1
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = +3

Query: 471 HAVAGTERRRRYRNAPWPVAD 533
           H V    R R YR+ PW VAD
Sbjct: 384 HCVMFKSRDRSYRDLPWRVAD 404


>SPAC5H10.01 |||DUF1445 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 301

 Score = 26.2 bits (55), Expect = 6.7
 Identities = 21/71 (29%), Positives = 28/71 (39%), Gaps = 6/71 (8%)
 Frame = -2

Query: 641 VREPVLPLRPRNGDFGTDFTVNLHHDQRGVFHHRFFVSNRP------RRVAISPSPFSSC 480
           V E  +P     GD    F  N+     GVF   F VS RP       R+    S +++C
Sbjct: 166 VAENFIPRHLPTGDAPPMFITNIPLCASGVFTGTFVVSMRPYPEKDLERIRKITSAYTNC 225

Query: 479 HSVKQMCGVNG 447
           H      G +G
Sbjct: 226 HGEPVAWGWDG 236


>SPAC20G8.10c ||SPAC3A12.01c|beclin family
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 464

 Score = 25.8 bits (54), Expect = 8.9
 Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 4/53 (7%)
 Frame = +1

Query: 424 LAVVRMLNPFTPHICFTLWQELKGEGDIAT----RRGRLLTKKRWWKTPRWSW 570
           L  ++ +N F+     + + E  GEG IAT    R GRL ++K  W     +W
Sbjct: 269 LEKLQKMNVFSDIFYISHYSEPNGEGSIATINGLRLGRLPSQKVNWAEINAAW 321


>SPAC23H3.15c ||SPAC25H1.01c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 325

 Score = 25.8 bits (54), Expect = 8.9
 Identities = 16/60 (26%), Positives = 23/60 (38%)
 Frame = +3

Query: 318 QTFNTAIAGDYGADEQTGESTNRWRAGSRSDAGSTAGRCPYA*PVHPAHLLHAVAGTERR 497
           Q+  T   GDYG D      T+ + +  ++    T G   Y      +H      GTE R
Sbjct: 160 QSRKTTQGGDYGEDYSQSYPTDTYGSRQKATPSDTVGGGAYDYSSSGSHTHGGSHGTEHR 219


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,920,273
Number of Sequences: 5004
Number of extensions: 82531
Number of successful extensions: 182
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 182
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 483319012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)